Bio.GFF3.Feature

Documentation

data GFFAttr

Constructors

GFFAttr

Fields

attrTag :: !ByteString

attrValues :: ![ByteString]

Instances

Eq GFFAttr

Ord GFFAttr

Show GFFAttr

data Feature

Constructors

Feature

Fields

seqid :: !ByteString

source :: !ByteString

ftype :: !ByteString

start :: !Offset

end :: !Offset

score :: !(Maybe Double)

strand :: !(Maybe Strand)

phase :: !(Maybe Offset)

attributes :: ![GFFAttr]

Instances

Eq Feature

Ord Feature

Show Feature

length :: Feature -> Offset

parse :: (Error e, MonadError e m) => ByteString -> m Feature

unparse :: Feature -> ByteString

parseWithFasta :: (Error e, MonadError e m) => ByteString -> m ([Feature], [ByteString])

attrByTag :: ByteString -> Feature -> [ByteString]

ids :: Feature -> [ByteString]

parentIds :: Feature -> [ByteString]

contigLoc :: Feature -> ContigLoc

loc :: Feature -> Loc

seqLoc :: Feature -> SeqLoc

name :: (Error e, MonadError e m) => Feature -> m SeqName