Build #2 for flowsim-0.3.5
| Package | flowsim-0.3.5 |
|---|
| Install | InstallOk |
|---|---|
| Docs | Ok |
| Tests | NotTried |
| Time submitted | 2015-05-19 05:59:32.741636 UTC |
|---|---|
| Compiler | ghc-7.8.3 |
| OS | linux |
| Arch | x86_64 |
| Dependencies | random-1.1, mtl-2.2.1, directory-1.2.1.0, containers-0.5.5.1, cmdargs-0.10.12, bytestring-0.10.4.0, biosff-0.3.7.1, biofasta-0.0.3, biocore-0.3.1, base-4.7.0.1, array-0.5.0.0, MonadRandom-0.4 |
| Flags | none |
Code Coverage
No Code Coverage was submitted for this report.
Build log
[view raw]
Resolving dependencies...
Configuring random-1.1...
Building random-1.1...
Preprocessing library random-1.1...
[1 of 1] Compiling System.Random ( System/Random.hs, dist/build/System/Random.o )
In-place registering random-1.1...
Running Haddock for random-1.1...
Running hscolour for random-1.1...
Preprocessing library random-1.1...
Preprocessing library random-1.1...
Haddock coverage:
Cannot find documentation for: $intro
100% ( 16 / 16) in 'System.Random'
Documentation created: dist/doc/html/random/index.html,
dist/doc/html/random/random.txt
Creating package registration file: /tmp/pkgConf-random-121566.1
Installing library in
/home/builder/hackage-server/build-cache/tmp-install/lib/x86_64-linux-ghc-7.8.3/random-1.1
Registering random-1.1...
Installed random-1.1
Configuring text-1.2.0.6...
Building text-1.2.0.6...
Preprocessing library text-1.2.0.6...
[ 1 of 43] Compiling Data.Text.Internal.Read ( Data/Text/Internal/Read.hs, dist/build/Data/Text/Internal/Read.o )
[ 2 of 43] Compiling Data.Text.Internal.Encoding.Utf32 ( Data/Text/Internal/Encoding/Utf32.hs, dist/build/Data/Text/Internal/Encoding/Utf32.o )
[ 3 of 43] Compiling Data.Text.Internal.Builder.RealFloat.Functions ( Data/Text/Internal/Builder/RealFloat/Functions.hs, dist/build/Data/Text/Internal/Builder/RealFloat/Functions.o )
[ 4 of 43] Compiling Data.Text.Internal.Builder.Int.Digits ( Data/Text/Internal/Builder/Int/Digits.hs, dist/build/Data/Text/Internal/Builder/Int/Digits.o )
[ 5 of 43] Compiling Data.Text.Encoding.Error ( Data/Text/Encoding/Error.hs, dist/build/Data/Text/Encoding/Error.o )
[ 6 of 43] Compiling Data.Text.Internal.Unsafe.Shift ( Data/Text/Internal/Unsafe/Shift.hs, dist/build/Data/Text/Internal/Unsafe/Shift.o )
[ 7 of 43] Compiling Data.Text.Internal.Encoding.Utf16 ( Data/Text/Internal/Encoding/Utf16.hs, dist/build/Data/Text/Internal/Encoding/Utf16.o )
[ 8 of 43] Compiling Data.Text.Internal.Functions ( Data/Text/Internal/Functions.hs, dist/build/Data/Text/Internal/Functions.o )
[ 9 of 43] Compiling Data.Text.Internal.Unsafe ( Data/Text/Internal/Unsafe.hs, dist/build/Data/Text/Internal/Unsafe.o )
[10 of 43] Compiling Data.Text.Array ( Data/Text/Array.hs, dist/build/Data/Text/Array.o )
[11 of 43] Compiling Data.Text.Internal.Unsafe.Char ( Data/Text/Internal/Unsafe/Char.hs, dist/build/Data/Text/Internal/Unsafe/Char.o )
[12 of 43] Compiling Data.Text.Internal ( Data/Text/Internal.hs, dist/build/Data/Text/Internal.o )
[13 of 43] Compiling Data.Text.Internal.Fusion.Size ( Data/Text/Internal/Fusion/Size.hs, dist/build/Data/Text/Internal/Fusion/Size.o )
[14 of 43] Compiling Data.Text.Internal.Fusion.Types ( Data/Text/Internal/Fusion/Types.hs, dist/build/Data/Text/Internal/Fusion/Types.o )
[15 of 43] Compiling Data.Text.Internal.Fusion.CaseMapping ( Data/Text/Internal/Fusion/CaseMapping.hs, dist/build/Data/Text/Internal/Fusion/CaseMapping.o )
[16 of 43] Compiling Data.Text.Internal.Fusion.Common ( Data/Text/Internal/Fusion/Common.hs, dist/build/Data/Text/Internal/Fusion/Common.o )
[17 of 43] Compiling Data.Text.Unsafe ( Data/Text/Unsafe.hs, dist/build/Data/Text/Unsafe.o )
[18 of 43] Compiling Data.Text.Internal.Private ( Data/Text/Internal/Private.hs, dist/build/Data/Text/Internal/Private.o )
[19 of 43] Compiling Data.Text.Internal.Fusion ( Data/Text/Internal/Fusion.hs, dist/build/Data/Text/Internal/Fusion.o )
[20 of 43] Compiling Data.Text.Internal.Encoding.Fusion.Common ( Data/Text/Internal/Encoding/Fusion/Common.hs, dist/build/Data/Text/Internal/Encoding/Fusion/Common.o )
[21 of 43] Compiling Data.Text.Internal.Encoding.Utf8 ( Data/Text/Internal/Encoding/Utf8.hs, dist/build/Data/Text/Internal/Encoding/Utf8.o )
[22 of 43] Compiling Data.Text.Internal.Encoding.Fusion ( Data/Text/Internal/Encoding/Fusion.hs, dist/build/Data/Text/Internal/Encoding/Fusion.o )
[23 of 43] Compiling Data.Text.Internal.Lazy.Encoding.Fusion ( Data/Text/Internal/Lazy/Encoding/Fusion.hs, dist/build/Data/Text/Internal/Lazy/Encoding/Fusion.o )
[24 of 43] Compiling Data.Text.Internal.Search ( Data/Text/Internal/Search.hs, dist/build/Data/Text/Internal/Search.o )
[25 of 43] Compiling Data.Text ( Data/Text.hs, dist/build/Data/Text.o )
[26 of 43] Compiling Data.Text.Encoding ( Data/Text/Encoding.hs, dist/build/Data/Text/Encoding.o )
[27 of 43] Compiling Data.Text.Foreign ( Data/Text/Foreign.hs, dist/build/Data/Text/Foreign.o )
[28 of 43] Compiling Data.Text.Internal.IO ( Data/Text/Internal/IO.hs, dist/build/Data/Text/Internal/IO.o )
[29 of 43] Compiling Data.Text.IO ( Data/Text/IO.hs, dist/build/Data/Text/IO.o )
[30 of 43] Compiling Data.Text.Internal.Lazy ( Data/Text/Internal/Lazy.hs, dist/build/Data/Text/Internal/Lazy.o )
[31 of 43] Compiling Data.Text.Internal.Lazy.Fusion ( Data/Text/Internal/Lazy/Fusion.hs, dist/build/Data/Text/Internal/Lazy/Fusion.o )
[32 of 43] Compiling Data.Text.Internal.Lazy.Search ( Data/Text/Internal/Lazy/Search.hs, dist/build/Data/Text/Internal/Lazy/Search.o )
[33 of 43] Compiling Data.Text.Lazy.Internal ( Data/Text/Lazy/Internal.hs, dist/build/Data/Text/Lazy/Internal.o )
[34 of 43] Compiling Data.Text.Lazy ( Data/Text/Lazy.hs, dist/build/Data/Text/Lazy.o )
[35 of 43] Compiling Data.Text.Internal.Builder ( Data/Text/Internal/Builder.hs, dist/build/Data/Text/Internal/Builder.o )
[36 of 43] Compiling Data.Text.Lazy.Builder ( Data/Text/Lazy/Builder.hs, dist/build/Data/Text/Lazy/Builder.o )
[37 of 43] Compiling Data.Text.Internal.Builder.Functions ( Data/Text/Internal/Builder/Functions.hs, dist/build/Data/Text/Internal/Builder/Functions.o )
[38 of 43] Compiling Data.Text.Lazy.Builder.Int ( Data/Text/Lazy/Builder/Int.hs, dist/build/Data/Text/Lazy/Builder/Int.o )
[39 of 43] Compiling Data.Text.Lazy.IO ( Data/Text/Lazy/IO.hs, dist/build/Data/Text/Lazy/IO.o )
[40 of 43] Compiling Data.Text.Lazy.Read ( Data/Text/Lazy/Read.hs, dist/build/Data/Text/Lazy/Read.o )
[41 of 43] Compiling Data.Text.Lazy.Builder.RealFloat ( Data/Text/Lazy/Builder/RealFloat.hs, dist/build/Data/Text/Lazy/Builder/RealFloat.o )
[42 of 43] Compiling Data.Text.Lazy.Encoding ( Data/Text/Lazy/Encoding.hs, dist/build/Data/Text/Lazy/Encoding.o )
[43 of 43] Compiling Data.Text.Read ( Data/Text/Read.hs, dist/build/Data/Text/Read.o )
In-place registering text-1.2.0.6...
Running Haddock for text-1.2.0.6...
Running hscolour for text-1.2.0.6...
Preprocessing library text-1.2.0.6...
Preprocessing library text-1.2.0.6...
Haddock coverage:
14% ( 1 / 7) in 'Data.Text.Internal.Read'
50% ( 1 / 2) in 'Data.Text.Internal.Encoding.Utf32'
50% ( 1 / 2) in 'Data.Text.Internal.Builder.RealFloat.Functions'
0% ( 0 / 2) in 'Data.Text.Internal.Builder.Int.Digits'
100% ( 12 / 12) in 'Data.Text.Encoding.Error'
100% ( 2 / 2) in 'Data.Text.Internal.Unsafe.Shift'
25% ( 1 / 4) in 'Data.Text.Internal.Encoding.Utf16'
100% ( 2 / 2) in 'Data.Text.Internal.Functions'
100% ( 3 / 3) in 'Data.Text.Internal.Unsafe'
100% ( 16 / 16) in 'Data.Text.Array'
33% ( 2 / 6) in 'Data.Text.Internal.Unsafe.Char'
95% ( 19 / 20) in 'Data.Text.Internal'
38% ( 5 / 13) in 'Data.Text.Internal.Fusion.Size'
88% ( 7 / 8) in 'Data.Text.Internal.Fusion.Types'
0% ( 0 / 5) in 'Data.Text.Internal.Fusion.CaseMapping'
89% ( 63 / 71) in 'Data.Text.Internal.Fusion.Common'
93% ( 13 / 14) in 'Data.Text.Unsafe'
33% ( 1 / 3) in 'Data.Text.Internal.Private'
91% ( 20 / 22) in 'Data.Text.Internal.Fusion'
33% ( 2 / 6) in 'Data.Text.Internal.Encoding.Fusion.Common'
17% ( 2 / 12) in 'Data.Text.Internal.Encoding.Utf8'
91% ( 10 / 11) in 'Data.Text.Internal.Encoding.Fusion'
100% ( 10 / 10) in 'Data.Text.Internal.Lazy.Encoding.Fusion'
100% ( 2 / 2) in 'Data.Text.Internal.Search'
100% (125 /125) in 'Data.Text'
100% ( 33 / 33) in 'Data.Text.Encoding'
100% ( 18 / 18) in 'Data.Text.Foreign'
100% ( 3 / 3) in 'Data.Text.Internal.IO'
100% ( 20 / 20) in 'Data.Text.IO'
93% ( 14 / 15) in 'Data.Text.Internal.Lazy'
100% ( 8 / 8) in 'Data.Text.Internal.Lazy.Fusion'
100% ( 2 / 2) in 'Data.Text.Internal.Lazy.Search'
100% ( 2 / 2) in 'Data.Text.Lazy.Internal'
99% (127 /128) in 'Data.Text.Lazy'
94% ( 16 / 17) in 'Data.Text.Internal.Builder'
100% ( 12 / 12) in 'Data.Text.Lazy.Builder'
100% ( 3 / 3) in 'Data.Text.Internal.Builder.Functions'
0% ( 0 / 3) in 'Data.Text.Lazy.Builder.Int'
100% ( 19 / 19) in 'Data.Text.Lazy.IO'
100% ( 7 / 7) in 'Data.Text.Lazy.Read'
75% ( 3 / 4) in 'Data.Text.Lazy.Builder.RealFloat'
89% ( 24 / 27) in 'Data.Text.Lazy.Encoding'
100% ( 7 / 7) in 'Data.Text.Read'
Warning: Data.Text.Internal.Fusion.Common: could not find link destinations for:
Data.Text.Internal.Fusion.Common.findIndicesI
Warning: Data.Text.Unsafe: could not find link destinations for:
GHC.IO.bracket
Warning: Data.Text: could not find link destinations for:
Data.Text.replicateChar Data.Text.countChar
Warning: Data.Text.Internal.IO: could not find link destinations for:
GHC.IO.Handle.Types.Handle__
Warning: Data.Text.Lazy: could not find link destinations for:
Data.Text.Lazy.replicateChar Data.Text.Lazy.dropWords Data.Text.Lazy.splitAtWord Data.Text.Lazy.countChar
Warning: Data.Text.Internal.Builder: could not find link destinations for:
Data.Text.Internal.Builder.empty Data.Text.Internal.Builder.append
Warning: Data.Text.Lazy.Builder.RealFloat: could not find link destinations for:
Data.Text.Lazy.Builder.RealFloat.floatToDigits
Documentation created: dist/doc/html/text/index.html,
dist/doc/html/text/text.txt
Creating package registration file: /tmp/pkgConf-text-1.2.021566.6
Installing library in
/home/builder/hackage-server/build-cache/tmp-install/lib/x86_64-linux-ghc-7.8.3/text-1.2.0.6
Registering text-1.2.0.6...
Installed text-1.2.0.6
Configuring transformers-0.4.3.0...
Building transformers-0.4.3.0...
Preprocessing library transformers-0.4.3.0...
[ 1 of 28] Compiling Data.Functor.Identity ( oldsrc/Data/Functor/Identity.hs, dist/build/Data/Functor/Identity.o )
[ 2 of 28] Compiling Control.Monad.Trans.Class ( Control/Monad/Trans/Class.hs, dist/build/Control/Monad/Trans/Class.o )
[ 3 of 28] Compiling Control.Monad.Signatures ( Control/Monad/Signatures.hs, dist/build/Control/Monad/Signatures.o )
[ 4 of 28] Compiling Control.Monad.IO.Class ( Control/Monad/IO/Class.hs, dist/build/Control/Monad/IO/Class.o )
[ 5 of 28] Compiling Control.Monad.Trans.Cont ( Control/Monad/Trans/Cont.hs, dist/build/Control/Monad/Trans/Cont.o )
[ 6 of 28] Compiling Control.Monad.Trans.Reader ( Control/Monad/Trans/Reader.hs, dist/build/Control/Monad/Trans/Reader.o )
[ 7 of 28] Compiling Control.Monad.Trans.RWS.Lazy ( Control/Monad/Trans/RWS/Lazy.hs, dist/build/Control/Monad/Trans/RWS/Lazy.o )
[ 8 of 28] Compiling Control.Monad.Trans.RWS ( Control/Monad/Trans/RWS.hs, dist/build/Control/Monad/Trans/RWS.o )
[ 9 of 28] Compiling Control.Monad.Trans.RWS.Strict ( Control/Monad/Trans/RWS/Strict.hs, dist/build/Control/Monad/Trans/RWS/Strict.o )
[10 of 28] Compiling Control.Monad.Trans.State.Lazy ( Control/Monad/Trans/State/Lazy.hs, dist/build/Control/Monad/Trans/State/Lazy.o )
[11 of 28] Compiling Control.Monad.Trans.State ( Control/Monad/Trans/State.hs, dist/build/Control/Monad/Trans/State.o )
[12 of 28] Compiling Control.Monad.Trans.State.Strict ( Control/Monad/Trans/State/Strict.hs, dist/build/Control/Monad/Trans/State/Strict.o )
[13 of 28] Compiling Data.Functor.Classes ( Data/Functor/Classes.hs, dist/build/Data/Functor/Classes.o )
[14 of 28] Compiling Data.Functor.Constant ( Data/Functor/Constant.hs, dist/build/Data/Functor/Constant.o )
[15 of 28] Compiling Control.Applicative.Lift ( Control/Applicative/Lift.hs, dist/build/Control/Applicative/Lift.o )
[16 of 28] Compiling Control.Monad.Trans.Except ( Control/Monad/Trans/Except.hs, dist/build/Control/Monad/Trans/Except.o )
[17 of 28] Compiling Control.Monad.Trans.Error ( Control/Monad/Trans/Error.hs, dist/build/Control/Monad/Trans/Error.o )
[18 of 28] Compiling Control.Monad.Trans.Identity ( Control/Monad/Trans/Identity.hs, dist/build/Control/Monad/Trans/Identity.o )
[19 of 28] Compiling Control.Monad.Trans.List ( Control/Monad/Trans/List.hs, dist/build/Control/Monad/Trans/List.o )
[20 of 28] Compiling Control.Monad.Trans.Maybe ( Control/Monad/Trans/Maybe.hs, dist/build/Control/Monad/Trans/Maybe.o )
[21 of 28] Compiling Control.Monad.Trans.Writer.Lazy ( Control/Monad/Trans/Writer/Lazy.hs, dist/build/Control/Monad/Trans/Writer/Lazy.o )
[22 of 28] Compiling Control.Monad.Trans.Writer ( Control/Monad/Trans/Writer.hs, dist/build/Control/Monad/Trans/Writer.o )
[23 of 28] Compiling Control.Monad.Trans.Writer.Strict ( Control/Monad/Trans/Writer/Strict.hs, dist/build/Control/Monad/Trans/Writer/Strict.o )
[24 of 28] Compiling Data.Functor.Compose ( Data/Functor/Compose.hs, dist/build/Data/Functor/Compose.o )
[25 of 28] Compiling Data.Functor.Product ( Data/Functor/Product.hs, dist/build/Data/Functor/Product.o )
[26 of 28] Compiling Data.Functor.Sum ( Data/Functor/Sum.hs, dist/build/Data/Functor/Sum.o )
[27 of 28] Compiling Control.Applicative.Backwards ( Control/Applicative/Backwards.hs, dist/build/Control/Applicative/Backwards.o )
[28 of 28] Compiling Data.Functor.Reverse ( Data/Functor/Reverse.hs, dist/build/Data/Functor/Reverse.o )
In-place registering transformers-0.4.3.0...
Running Haddock for transformers-0.4.3.0...
Running hscolour for transformers-0.4.3.0...
Preprocessing library transformers-0.4.3.0...
Preprocessing library transformers-0.4.3.0...
Haddock coverage:
100% ( 2 / 2) in 'Data.Functor.Identity'
100% ( 14 / 14) in 'Control.Monad.Trans.Class'
100% ( 5 / 5) in 'Control.Monad.Signatures'
100% ( 2 / 2) in 'Control.Monad.IO.Class'
100% ( 22 / 22) in 'Control.Monad.Trans.Cont'
100% ( 18 / 18) in 'Control.Monad.Trans.Reader'
100% ( 37 / 37) in 'Control.Monad.Trans.RWS.Lazy'
100% ( 2 / 2) in 'Control.Monad.Trans.RWS'
100% ( 37 / 37) in 'Control.Monad.Trans.RWS.Strict'
100% ( 34 / 34) in 'Control.Monad.Trans.State.Lazy'
100% ( 2 / 2) in 'Control.Monad.Trans.State'
100% ( 34 / 34) in 'Control.Monad.Trans.State.Strict'
100% ( 15 / 15) in 'Data.Functor.Classes'
100% ( 2 / 2) in 'Data.Functor.Constant'
100% ( 9 / 9) in 'Control.Applicative.Lift'
100% ( 19 / 19) in 'Control.Monad.Trans.Except'
100% ( 15 / 15) in 'Control.Monad.Trans.Error'
100% ( 7 / 7) in 'Control.Monad.Trans.Identity'
100% ( 7 / 7) in 'Control.Monad.Trans.List'
100% ( 12 / 12) in 'Control.Monad.Trans.Maybe'
100% ( 20 / 20) in 'Control.Monad.Trans.Writer.Lazy'
100% ( 2 / 2) in 'Control.Monad.Trans.Writer'
100% ( 20 / 20) in 'Control.Monad.Trans.Writer.Strict'
100% ( 2 / 2) in 'Data.Functor.Compose'
100% ( 2 / 2) in 'Data.Functor.Product'
100% ( 2 / 2) in 'Data.Functor.Sum'
100% ( 2 / 2) in 'Control.Applicative.Backwards'
100% ( 2 / 2) in 'Data.Functor.Reverse'
Documentation created: dist/doc/html/transformers/index.html,
dist/doc/html/transformers/transformers.txt
Creating package registration file: /tmp/pkgConf-transformers-0.4.321566.0
Installing library in
/home/builder/hackage-server/build-cache/tmp-install/lib/x86_64-linux-ghc-7.8.3/transformers-0.4.3.0
Registering transformers-0.4.3.0...
Installed transformers-0.4.3.0
[1 of 1] Compiling Main ( /tmp/system-filepath-0.4.13.4-21566/system-filepath-0.4.13.4/dist/setup/setup.hs, /tmp/system-filepath-0.4.13.4-21566/system-filepath-0.4.13.4/dist/setup/Main.o )
Linking /tmp/system-filepath-0.4.13.4-21566/system-filepath-0.4.13.4/dist/setup/setup ...
Configuring system-filepath-0.4.13.4...
Building system-filepath-0.4.13.4...
Preprocessing library system-filepath-0.4.13.4...
[1 of 4] Compiling Filesystem.Path.Internal ( lib/Filesystem/Path/Internal.hs, dist/build/Filesystem/Path/Internal.o )
lib/Filesystem/Path/Internal.hs:17:1: Warning:
The qualified import of ‘Control.Exception’ is redundant
except perhaps to import instances from ‘Control.Exception’
To import instances alone, use: import Control.Exception()
lib/Filesystem/Path/Internal.hs:26:1: Warning:
The import of ‘Data.Text.Encoding.Error’ is redundant
except perhaps to import instances from ‘Data.Text.Encoding.Error’
To import instances alone, use: import Data.Text.Encoding.Error()
[2 of 4] Compiling Filesystem.Path ( lib/Filesystem/Path.hs, dist/build/Filesystem/Path.o )
[3 of 4] Compiling Filesystem.Path.Rules ( lib/Filesystem/Path/Rules.hs, dist/build/Filesystem/Path/Rules.o )
[4 of 4] Compiling Filesystem.Path.CurrentOS ( lib/Filesystem/Path/CurrentOS.hs, dist/build/Filesystem/Path/CurrentOS.o )
In-place registering system-filepath-0.4.13.4...
Running Haddock for system-filepath-0.4.13.4...
Running hscolour for system-filepath-0.4.13.4...
Preprocessing library system-filepath-0.4.13.4...
Preprocessing library system-filepath-0.4.13.4...
lib/Filesystem/Path/Internal.hs:17:1: Warning:
The qualified import of ‘Control.Exception’ is redundant
except perhaps to import instances from ‘Control.Exception’
To import instances alone, use: import Control.Exception()
lib/Filesystem/Path/Internal.hs:26:1: Warning:
The import of ‘Data.Text.Encoding.Error’ is redundant
except perhaps to import instances from ‘Data.Text.Encoding.Error’
To import instances alone, use: import Data.Text.Encoding.Error()
lib/Filesystem/Path/CurrentOS.hs:37:1: Warning:
The qualified import of ‘Data.ByteString’ is redundant
except perhaps to import instances from ‘Data.ByteString’
To import instances alone, use: import Data.ByteString()
Haddock coverage:
11% ( 3 / 28) in 'Filesystem.Path.Internal'
97% ( 33 / 34) in 'Filesystem.Path'
100% ( 19 / 19) in 'Filesystem.Path.Rules'
93% ( 13 / 14) in 'Filesystem.Path.CurrentOS'
Documentation created: dist/doc/html/system-filepath/index.html,
dist/doc/html/system-filepath/system-filepath.txt
Creating package registration file: /tmp/pkgConf-system-filepath-0.4.1321566.4
Installing library in
/home/builder/hackage-server/build-cache/tmp-install/lib/x86_64-linux-ghc-7.8.3/system-filepath-0.4.13.4
Registering system-filepath-0.4.13.4...
Installed system-filepath-0.4.13.4
Configuring cmdargs-0.10.12...
Building cmdargs-0.10.12...
Preprocessing library cmdargs-0.10.12...
[ 1 of 25] Compiling System.Console.CmdArgs.Implicit.Ann ( System/Console/CmdArgs/Implicit/Ann.hs, dist/build/System/Console/CmdArgs/Implicit/Ann.o )
[ 2 of 25] Compiling System.Console.CmdArgs.Implicit.UI ( System/Console/CmdArgs/Implicit/UI.hs, dist/build/System/Console/CmdArgs/Implicit/UI.o )
[ 3 of 25] Compiling System.Console.CmdArgs.Verbosity ( System/Console/CmdArgs/Verbosity.hs, dist/build/System/Console/CmdArgs/Verbosity.o )
[ 4 of 25] Compiling System.Console.CmdArgs.Implicit.Type ( System/Console/CmdArgs/Implicit/Type.hs, dist/build/System/Console/CmdArgs/Implicit/Type.o )
[ 5 of 25] Compiling System.Console.CmdArgs.Explicit.SplitJoin ( System/Console/CmdArgs/Explicit/SplitJoin.hs, dist/build/System/Console/CmdArgs/Explicit/SplitJoin.o )
[ 6 of 25] Compiling System.Console.CmdArgs.Explicit.ExpandArgsAt ( System/Console/CmdArgs/Explicit/ExpandArgsAt.hs, dist/build/System/Console/CmdArgs/Explicit/ExpandArgsAt.o )
[ 7 of 25] Compiling System.Console.CmdArgs.Explicit.Type ( System/Console/CmdArgs/Explicit/Type.hs, dist/build/System/Console/CmdArgs/Explicit/Type.o )
[ 8 of 25] Compiling System.Console.CmdArgs.Explicit.Process ( System/Console/CmdArgs/Explicit/Process.hs, dist/build/System/Console/CmdArgs/Explicit/Process.o )
[ 9 of 25] Compiling System.Console.CmdArgs.Explicit.Complete ( System/Console/CmdArgs/Explicit/Complete.hs, dist/build/System/Console/CmdArgs/Explicit/Complete.o )
[10 of 25] Compiling System.Console.CmdArgs.Helper ( System/Console/CmdArgs/Helper.hs, dist/build/System/Console/CmdArgs/Helper.o )
[11 of 25] Compiling System.Console.CmdArgs.Default ( System/Console/CmdArgs/Default.hs, dist/build/System/Console/CmdArgs/Default.o )
[12 of 25] Compiling System.Console.CmdArgs.Text ( System/Console/CmdArgs/Text.hs, dist/build/System/Console/CmdArgs/Text.o )
[13 of 25] Compiling System.Console.CmdArgs.Explicit.Help ( System/Console/CmdArgs/Explicit/Help.hs, dist/build/System/Console/CmdArgs/Explicit/Help.o )
[14 of 25] Compiling System.Console.CmdArgs.Explicit ( System/Console/CmdArgs/Explicit.hs, dist/build/System/Console/CmdArgs/Explicit.o )
[15 of 25] Compiling System.Console.CmdArgs.GetOpt ( System/Console/CmdArgs/GetOpt.hs, dist/build/System/Console/CmdArgs/GetOpt.o )
[16 of 25] Compiling Data.Generics.Any ( Data/Generics/Any.hs, dist/build/Data/Generics/Any.o )
[17 of 25] Compiling Data.Generics.Any.Prelude ( Data/Generics/Any/Prelude.hs, dist/build/Data/Generics/Any/Prelude.o )
[18 of 25] Compiling System.Console.CmdArgs.Implicit.Reader ( System/Console/CmdArgs/Implicit/Reader.hs, dist/build/System/Console/CmdArgs/Implicit/Reader.o )
[19 of 25] Compiling System.Console.CmdArgs.Annotate ( System/Console/CmdArgs/Annotate.hs, dist/build/System/Console/CmdArgs/Annotate.o )
[20 of 25] Compiling System.Console.CmdArgs.Implicit.Local ( System/Console/CmdArgs/Implicit/Local.hs, dist/build/System/Console/CmdArgs/Implicit/Local.o )
[21 of 25] Compiling System.Console.CmdArgs.Implicit.Reform ( System/Console/CmdArgs/Implicit/Reform.hs, dist/build/System/Console/CmdArgs/Implicit/Reform.o )
[22 of 25] Compiling System.Console.CmdArgs.Implicit.Global ( System/Console/CmdArgs/Implicit/Global.hs, dist/build/System/Console/CmdArgs/Implicit/Global.o )
[23 of 25] Compiling System.Console.CmdArgs.Implicit ( System/Console/CmdArgs/Implicit.hs, dist/build/System/Console/CmdArgs/Implicit.o )
[24 of 25] Compiling System.Console.CmdArgs.Quote ( System/Console/CmdArgs/Quote.hs, dist/build/System/Console/CmdArgs/Quote.o )
[25 of 25] Compiling System.Console.CmdArgs ( System/Console/CmdArgs.hs, dist/build/System/Console/CmdArgs.o )
In-place registering cmdargs-0.10.12...
Running Haddock for cmdargs-0.10.12...
Running hscolour for cmdargs-0.10.12...
Preprocessing library cmdargs-0.10.12...
Preprocessing library cmdargs-0.10.12...
Haddock coverage:
50% ( 1 / 2) in 'System.Console.CmdArgs.Implicit.Ann'
100% ( 21 / 21) in 'System.Console.CmdArgs.Implicit.UI'
100% ( 8 / 8) in 'System.Console.CmdArgs.Verbosity'
25% ( 2 / 8) in 'System.Console.CmdArgs.Implicit.Type'
67% ( 2 / 3) in 'System.Console.CmdArgs.Explicit.SplitJoin'
50% ( 1 / 2) in 'System.Console.CmdArgs.Explicit.ExpandArgsAt'
73% ( 24 / 33) in 'System.Console.CmdArgs.Explicit.Type'
50% ( 1 / 2) in 'System.Console.CmdArgs.Explicit.Process'
60% ( 3 / 5) in 'System.Console.CmdArgs.Explicit.Complete'
100% ( 8 / 8) in 'System.Console.CmdArgs.Helper'
7% ( 2 / 28) in 'System.Console.CmdArgs.Default'
100% ( 5 / 5) in 'System.Console.CmdArgs.Text'
67% ( 2 / 3) in 'System.Console.CmdArgs.Explicit.Help'
85% ( 44 / 52) in 'System.Console.CmdArgs.Explicit'
100% ( 8 / 8) in 'System.Console.CmdArgs.GetOpt'
4% ( 1 / 27) in 'Data.Generics.Any'
0% ( 0 / 20) in 'Data.Generics.Any.Prelude'
0% ( 0 / 3) in 'System.Console.CmdArgs.Implicit.Reader'
100% ( 17 / 17) in 'System.Console.CmdArgs.Annotate'
8% ( 1 / 12) in 'System.Console.CmdArgs.Implicit.Local'
0% ( 0 / 2) in 'System.Console.CmdArgs.Implicit.Reform'
0% ( 0 / 2) in 'System.Console.CmdArgs.Implicit.Global'
100% ( 50 / 50) in 'System.Console.CmdArgs.Implicit'
100% ( 9 / 9) in 'System.Console.CmdArgs.Quote'
100% ( 2 / 2) in 'System.Console.CmdArgs'
Warning: System.Console.CmdArgs.Implicit: could not find link destinations for:
System.Console.CmdArgs.Implicit.Type.CmdArgsPrivate GHC.IO.Handle.Types.Handle__
Documentation created: dist/doc/html/cmdargs/index.html,
dist/doc/html/cmdargs/cmdargs.txt
Creating package registration file: /tmp/pkgConf-cmdargs-0.1021566.12
Installing library in
/home/builder/hackage-server/build-cache/tmp-install/lib/x86_64-linux-ghc-7.8.3/cmdargs-0.10.12
Registering cmdargs-0.10.12...
Installed cmdargs-0.10.12
Configuring mtl-2.2.1...
Building mtl-2.2.1...
Preprocessing library mtl-2.2.1...
[ 1 of 22] Compiling Control.Monad.Writer.Class ( Control/Monad/Writer/Class.hs, dist/build/Control/Monad/Writer/Class.o )
[ 2 of 22] Compiling Control.Monad.State.Class ( Control/Monad/State/Class.hs, dist/build/Control/Monad/State/Class.o )
[ 3 of 22] Compiling Control.Monad.Reader.Class ( Control/Monad/Reader/Class.hs, dist/build/Control/Monad/Reader/Class.o )
[ 4 of 22] Compiling Control.Monad.RWS.Class ( Control/Monad/RWS/Class.hs, dist/build/Control/Monad/RWS/Class.o )
[ 5 of 22] Compiling Control.Monad.Identity ( Control/Monad/Identity.hs, dist/build/Control/Monad/Identity.o )
[ 6 of 22] Compiling Control.Monad.Error.Class ( Control/Monad/Error/Class.hs, dist/build/Control/Monad/Error/Class.o )
[ 7 of 22] Compiling Control.Monad.Cont.Class ( Control/Monad/Cont/Class.hs, dist/build/Control/Monad/Cont/Class.o )
[ 8 of 22] Compiling Control.Monad.Trans ( Control/Monad/Trans.hs, dist/build/Control/Monad/Trans.o )
[ 9 of 22] Compiling Control.Monad.Error ( Control/Monad/Error.hs, dist/build/Control/Monad/Error.o )
[10 of 22] Compiling Control.Monad.Except ( Control/Monad/Except.hs, dist/build/Control/Monad/Except.o )
[11 of 22] Compiling Control.Monad.List ( Control/Monad/List.hs, dist/build/Control/Monad/List.o )
[12 of 22] Compiling Control.Monad.RWS.Lazy ( Control/Monad/RWS/Lazy.hs, dist/build/Control/Monad/RWS/Lazy.o )
[13 of 22] Compiling Control.Monad.RWS ( Control/Monad/RWS.hs, dist/build/Control/Monad/RWS.o )
[14 of 22] Compiling Control.Monad.Reader ( Control/Monad/Reader.hs, dist/build/Control/Monad/Reader.o )
[15 of 22] Compiling Control.Monad.RWS.Strict ( Control/Monad/RWS/Strict.hs, dist/build/Control/Monad/RWS/Strict.o )
[16 of 22] Compiling Control.Monad.State.Lazy ( Control/Monad/State/Lazy.hs, dist/build/Control/Monad/State/Lazy.o )
[17 of 22] Compiling Control.Monad.State ( Control/Monad/State.hs, dist/build/Control/Monad/State.o )
[18 of 22] Compiling Control.Monad.State.Strict ( Control/Monad/State/Strict.hs, dist/build/Control/Monad/State/Strict.o )
[19 of 22] Compiling Control.Monad.Writer.Lazy ( Control/Monad/Writer/Lazy.hs, dist/build/Control/Monad/Writer/Lazy.o )
[20 of 22] Compiling Control.Monad.Writer ( Control/Monad/Writer.hs, dist/build/Control/Monad/Writer.o )
[21 of 22] Compiling Control.Monad.Writer.Strict ( Control/Monad/Writer/Strict.hs, dist/build/Control/Monad/Writer/Strict.o )
[22 of 22] Compiling Control.Monad.Cont ( Control/Monad/Cont.hs, dist/build/Control/Monad/Cont.o )
In-place registering mtl-2.2.1...
Running Haddock for mtl-2.2.1...
Running hscolour for mtl-2.2.1...
Preprocessing library mtl-2.2.1...
Preprocessing library mtl-2.2.1...
Haddock coverage:
75% ( 3 / 4) in 'Control.Monad.Writer.Class'
100% ( 5 / 5) in 'Control.Monad.State.Class'
100% ( 3 / 3) in 'Control.Monad.Reader.Class'
80% ( 4 / 5) in 'Control.Monad.RWS.Class'
100% ( 4 / 4) in 'Control.Monad.Identity'
100% ( 3 / 3) in 'Control.Monad.Error.Class'
50% ( 1 / 2) in 'Control.Monad.Cont.Class'
100% ( 3 / 3) in 'Control.Monad.Trans'
93% ( 14 / 15) in 'Control.Monad.Error'
100% ( 19 / 19) in 'Control.Monad.Except'
100% ( 5 / 5) in 'Control.Monad.List'
95% ( 21 / 22) in 'Control.Monad.RWS.Lazy'
100% ( 2 / 2) in 'Control.Monad.RWS'
96% ( 22 / 23) in 'Control.Monad.Reader'
95% ( 21 / 22) in 'Control.Monad.RWS.Strict'
96% ( 24 / 25) in 'Control.Monad.State.Lazy'
100% ( 2 / 2) in 'Control.Monad.State'
96% ( 24 / 25) in 'Control.Monad.State.Strict'
89% ( 17 / 19) in 'Control.Monad.Writer.Lazy'
100% ( 2 / 2) in 'Control.Monad.Writer'
94% ( 17 / 18) in 'Control.Monad.Writer.Strict'
91% ( 20 / 22) in 'Control.Monad.Cont'
Documentation created: dist/doc/html/mtl/index.html, dist/doc/html/mtl/mtl.txt
Creating package registration file: /tmp/pkgConf-mtl-2.221566.1
Installing library in
/home/builder/hackage-server/build-cache/tmp-install/lib/x86_64-linux-ghc-7.8.3/mtl-2.2.1
Registering mtl-2.2.1...
Installed mtl-2.2.1
Configuring transformers-compat-0.4.0.4...
Building transformers-compat-0.4.0.4...
Preprocessing library transformers-compat-0.4.0.4...
[1 of 1] Compiling Paths_transformers_compat ( dist/build/autogen/Paths_transformers_compat.hs, dist/build/Paths_transformers_compat.o )
In-place registering transformers-compat-0.4.0.4...
Running Haddock for transformers-compat-0.4.0.4...
Running hscolour for transformers-compat-0.4.0.4...
Preprocessing library transformers-compat-0.4.0.4...
Preprocessing library transformers-compat-0.4.0.4...
Haddock coverage:
0% ( 0 / 8) in 'Paths_transformers_compat'
Documentation created: dist/doc/html/transformers-compat/index.html,
dist/doc/html/transformers-compat/transformers-compat.txt
Creating package registration file:
/tmp/pkgConf-transformers-compat-0.4.021566.4
Installing library in
/home/builder/hackage-server/build-cache/tmp-install/lib/x86_64-linux-ghc-7.8.3/transformers-compat-0.4.0.4
Registering transformers-compat-0.4.0.4...
Installed transformers-compat-0.4.0.4
Configuring stringable-0.1.3...
Building stringable-0.1.3...
Preprocessing library stringable-0.1.3...
[1 of 1] Compiling Data.Stringable ( Data/Stringable.hs, dist/build/Data/Stringable.o )
In-place registering stringable-0.1.3...
Running Haddock for stringable-0.1.3...
Running hscolour for stringable-0.1.3...
Preprocessing library stringable-0.1.3...
Preprocessing library stringable-0.1.3...
Haddock coverage:
0% ( 0 / 3) in 'Data.Stringable'
Documentation created: dist/doc/html/stringable/index.html,
dist/doc/html/stringable/stringable.txt
Creating package registration file: /tmp/pkgConf-stringable-0.121566.3
Installing library in
/home/builder/hackage-server/build-cache/tmp-install/lib/x86_64-linux-ghc-7.8.3/stringable-0.1.3
Registering stringable-0.1.3...
Installed stringable-0.1.3
Configuring MonadRandom-0.4...
Building MonadRandom-0.4...
Preprocessing library MonadRandom-0.4...
[1 of 2] Compiling Control.Monad.Random.Class ( Control/Monad/Random/Class.hs, dist/build/Control/Monad/Random/Class.o )
[2 of 2] Compiling Control.Monad.Random ( Control/Monad/Random.hs, dist/build/Control/Monad/Random.o )
Control/Monad/Random.hs:53:1: Warning:
Module ‘Control.Monad.Error’ is deprecated:
Use Control.Monad.Except instead
Control/Monad/Random.hs:202:11: Warning:
In the use of type constructor or class ‘Error’
(imported from Control.Monad.Error, but defined in Control.Monad.Trans.Error):
Deprecated: "Use Control.Monad.Trans.Except instead"
Control/Monad/Random.hs:202:51: Warning:
In the use of type constructor or class ‘ErrorT’
(imported from Control.Monad.Error, but defined in Control.Monad.Trans.Error):
Deprecated: "Use Control.Monad.Trans.Except instead"
Control/Monad/Random.hs:247:11: Warning:
In the use of type constructor or class ‘Error’
(imported from Control.Monad.Error, but defined in Control.Monad.Trans.Error):
Deprecated: "Use Control.Monad.Trans.Except instead"
Control/Monad/Random.hs:247:53: Warning:
In the use of type constructor or class ‘ErrorT’
(imported from Control.Monad.Error, but defined in Control.Monad.Trans.Error):
Deprecated: "Use Control.Monad.Trans.Except instead"
In-place registering MonadRandom-0.4...
Running Haddock for MonadRandom-0.4...
Running hscolour for MonadRandom-0.4...
Preprocessing library MonadRandom-0.4...
Preprocessing library MonadRandom-0.4...
Control/Monad/Random.hs:53:1: Warning:
Module ‘Control.Monad.Error’ is deprecated:
Use Control.Monad.Except instead
Control/Monad/Random.hs:202:11: Warning:
In the use of type constructor or class ‘Error’
(imported from Control.Monad.Error, but defined in Control.Monad.Trans.Error):
Deprecated: "Use Control.Monad.Trans.Except instead"
Control/Monad/Random.hs:202:51: Warning:
In the use of type constructor or class ‘ErrorT’
(imported from Control.Monad.Error, but defined in Control.Monad.Trans.Error):
Deprecated: "Use Control.Monad.Trans.Except instead"
Control/Monad/Random.hs:247:11: Warning:
In the use of type constructor or class ‘Error’
(imported from Control.Monad.Error, but defined in Control.Monad.Trans.Error):
Deprecated: "Use Control.Monad.Trans.Except instead"
Control/Monad/Random.hs:247:53: Warning:
In the use of type constructor or class ‘ErrorT’
(imported from Control.Monad.Error, but defined in Control.Monad.Trans.Error):
Deprecated: "Use Control.Monad.Trans.Except instead"
Haddock coverage:
Warning: Control.Monad.Random.Class: getRandom is exported separately but will be documented under MonadRandom. Consider exporting it together with its parent(s) for code clarity.
Warning: Control.Monad.Random.Class: getRandomR is exported separately but will be documented under MonadRandom. Consider exporting it together with its parent(s) for code clarity.
Warning: Control.Monad.Random.Class: getRandoms is exported separately but will be documented under MonadRandom. Consider exporting it together with its parent(s) for code clarity.
Warning: Control.Monad.Random.Class: getRandomRs is exported separately but will be documented under MonadRandom. Consider exporting it together with its parent(s) for code clarity.
Warning: Control.Monad.Random.Class: getSplit is exported separately but will be documented under MonadSplit. Consider exporting it together with its parent(s) for code clarity.
100% ( 3 / 3) in 'Control.Monad.Random.Class'
100% ( 17 / 17) in 'Control.Monad.Random'
Documentation created: dist/doc/html/MonadRandom/index.html,
dist/doc/html/MonadRandom/MonadRandom.txt
Creating package registration file: /tmp/pkgConf-MonadRandom-021566.4
Installing library in
/home/builder/hackage-server/build-cache/tmp-install/lib/x86_64-linux-ghc-7.8.3/MonadRandom-0.4
Registering MonadRandom-0.4...
Installed MonadRandom-0.4
Configuring biocore-0.3.1...
Building biocore-0.3.1...
Preprocessing library biocore-0.3.1...
[1 of 3] Compiling Bio.Core.Strand ( src/Bio/Core/Strand.hs, dist/build/Bio/Core/Strand.o )
[2 of 3] Compiling Bio.Core.Sequence ( src/Bio/Core/Sequence.hs, dist/build/Bio/Core/Sequence.o )
[3 of 3] Compiling Bio.Core ( src/Bio/Core.hs, dist/build/Bio/Core.o )
In-place registering biocore-0.3.1...
Running Haddock for biocore-0.3.1...
Running hscolour for biocore-0.3.1...
Preprocessing library biocore-0.3.1...
Preprocessing library biocore-0.3.1...
Haddock coverage:
100% ( 2 / 2) in 'Bio.Core.Strand'
100% ( 15 / 15) in 'Bio.Core.Sequence'
100% ( 3 / 3) in 'Bio.Core'
Documentation created: dist/doc/html/biocore/index.html,
dist/doc/html/biocore/biocore.txt
Creating package registration file: /tmp/pkgConf-biocore-0.321566.1
Installing library in
/home/builder/hackage-server/build-cache/tmp-install/lib/x86_64-linux-ghc-7.8.3/biocore-0.3.1
Registering biocore-0.3.1...
Installed biocore-0.3.1
Configuring biofasta-0.0.3...
Building biofasta-0.0.3...
Preprocessing library biofasta-0.0.3...
[1 of 1] Compiling Bio.Sequence.Fasta ( src/Bio/Sequence/Fasta.hs, dist/build/Bio/Sequence/Fasta.o )
In-place registering biofasta-0.0.3...
Running Haddock for biofasta-0.0.3...
Running hscolour for biofasta-0.0.3...
Preprocessing library biofasta-0.0.3...
Preprocessing library biofasta-0.0.3...
Haddock coverage:
59% ( 10 / 17) in 'Bio.Sequence.Fasta'
Documentation created: dist/doc/html/biofasta/index.html,
dist/doc/html/biofasta/biofasta.txt
Creating package registration file: /tmp/pkgConf-biofasta-0.021566.3
Installing library in
/home/builder/hackage-server/build-cache/tmp-install/lib/x86_64-linux-ghc-7.8.3/biofasta-0.0.3
Registering biofasta-0.0.3...
Installed biofasta-0.0.3
Downloading biosff-0.3.7.1...
Configuring biosff-0.3.7.1...
Building biosff-0.3.7.1...
Preprocessing library biosff-0.3.7.1...
[1 of 3] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/Bio/Sequence/SFF_name.o )
[2 of 3] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/Bio/Sequence/SFF.o )
src/Bio/Sequence/SFF.hs:68:32: Warning:
In the use of ‘runGetState’ (imported from Data.Binary.Get):
Deprecated: "Use runGetIncremental instead. This function will be removed."
src/Bio/Sequence/SFF.hs:75:22: Warning:
In the use of ‘runGetState’ (imported from Data.Binary.Get):
Deprecated: "Use runGetIncremental instead. This function will be removed."
[3 of 3] Compiling Bio.Sequence.SFF_filters ( src/Bio/Sequence/SFF_filters.hs, dist/build/Bio/Sequence/SFF_filters.o )
In-place registering biosff-0.3.7.1...
Preprocessing executable 'flower' for biosff-0.3.7.1...
[1 of 8] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/flower/flower-tmp/Bio/Sequence/SFF_name.o )
[2 of 8] Compiling Fork ( src/Flower/Fork.hs, dist/build/flower/flower-tmp/Fork.o )
[3 of 8] Compiling Options ( src/Flower/Options.hs, dist/build/flower/flower-tmp/Options.o )
[4 of 8] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/flower/flower-tmp/Bio/Sequence/SFF.o )
src/Bio/Sequence/SFF.hs:68:32: Warning:
In the use of ‘runGetState’ (imported from Data.Binary.Get):
Deprecated: "Use runGetIncremental instead. This function will be removed."
src/Bio/Sequence/SFF.hs:75:22: Warning:
In the use of ‘runGetState’ (imported from Data.Binary.Get):
Deprecated: "Use runGetIncremental instead. This function will be removed."
[5 of 8] Compiling Bio.Sequence.SFF_filters ( src/Bio/Sequence/SFF_filters.hs, dist/build/flower/flower-tmp/Bio/Sequence/SFF_filters.o )
[6 of 8] Compiling Metrics ( src/Flower/Metrics.hs, dist/build/flower/flower-tmp/Metrics.o )
[7 of 8] Compiling Print ( src/Flower/Print.hs, dist/build/flower/flower-tmp/Print.o )
[8 of 8] Compiling Main ( src/Flower/Main.hs, dist/build/flower/flower-tmp/Main.o )
src/Flower/Main.hs:24:1: Warning:
Module ‘Data.Array.ST’ does not export ‘unsafeFreeze’
src/Flower/Main.hs:76:1: Warning: Defined but not used: ‘isEmpty’
src/Flower/Main.hs:76:1: Warning:
Top-level binding with no type signature:
isEmpty :: forall t. t -> Bool
src/Flower/Main.hs:76:9: Warning: Defined but not used: ‘r’
Linking dist/build/flower/flower ...
Preprocessing executable 'frecover' for biosff-0.3.7.1...
[1 of 3] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/frecover/frecover-tmp/Bio/Sequence/SFF_name.o )
[2 of 3] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/frecover/frecover-tmp/Bio/Sequence/SFF.o )
src/Bio/Sequence/SFF.hs:68:32: Warning:
In the use of ‘runGetState’ (imported from Data.Binary.Get):
Deprecated: "Use runGetIncremental instead. This function will be removed."
src/Bio/Sequence/SFF.hs:75:22: Warning:
In the use of ‘runGetState’ (imported from Data.Binary.Get):
Deprecated: "Use runGetIncremental instead. This function will be removed."
[3 of 3] Compiling Main ( src/FRecover/Main.hs, dist/build/frecover/frecover-tmp/Main.o )
Linking dist/build/frecover/frecover ...
Preprocessing executable 'fclip' for biosff-0.3.7.1...
[1 of 4] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/fclip/fclip-tmp/Bio/Sequence/SFF_name.o )
[2 of 4] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/fclip/fclip-tmp/Bio/Sequence/SFF.o )
src/Bio/Sequence/SFF.hs:68:32: Warning:
In the use of ‘runGetState’ (imported from Data.Binary.Get):
Deprecated: "Use runGetIncremental instead. This function will be removed."
src/Bio/Sequence/SFF.hs:75:22: Warning:
In the use of ‘runGetState’ (imported from Data.Binary.Get):
Deprecated: "Use runGetIncremental instead. This function will be removed."
[3 of 4] Compiling Options ( src/FClip/Options.hs, dist/build/fclip/fclip-tmp/Options.o )
[4 of 4] Compiling Main ( src/FClip/Main.hs, dist/build/fclip/fclip-tmp/Main.o )
Linking dist/build/fclip/fclip ...
Running Haddock for biosff-0.3.7.1...
Running hscolour for biosff-0.3.7.1...
Preprocessing library biosff-0.3.7.1...
Preprocessing executable 'flower' for biosff-0.3.7.1...
Preprocessing executable 'frecover' for biosff-0.3.7.1...
Preprocessing executable 'fclip' for biosff-0.3.7.1...
Preprocessing library biosff-0.3.7.1...
src/Bio/Sequence/SFF.hs:68:32: Warning:
In the use of ‘runGetState’ (imported from Data.Binary.Get):
Deprecated: "Use runGetIncremental instead. This function will be removed."
src/Bio/Sequence/SFF.hs:75:22: Warning:
In the use of ‘runGetState’ (imported from Data.Binary.Get):
Deprecated: "Use runGetIncremental instead. This function will be removed."
Haddock coverage:
7% ( 1 / 14) in 'Bio.Sequence.SFF_name'
91% ( 30 / 33) in 'Bio.Sequence.SFF'
66% ( 19 / 29) in 'Bio.Sequence.SFF_filters'
Documentation created: dist/doc/html/biosff/index.html,
dist/doc/html/biosff/biosff.txt
Preprocessing executable 'flower' for biosff-0.3.7.1...
Preprocessing executable 'frecover' for biosff-0.3.7.1...
Preprocessing executable 'fclip' for biosff-0.3.7.1...
Creating package registration file: /tmp/pkgConf-biosff-0.3.721566.1
Installing library in
/home/builder/hackage-server/build-cache/tmp-install/lib/x86_64-linux-ghc-7.8.3/biosff-0.3.7.1
Installing executable(s) in
/home/builder/hackage-server/build-cache/tmp-install/bin
Warning: The directory
/home/builder/hackage-server/build-cache/tmp-install/bin is not in the system
search path.
Registering biosff-0.3.7.1...
Installed biosff-0.3.7.1
Downloading flowsim-0.3.5...
Configuring flowsim-0.3.5...
Building flowsim-0.3.5...
Preprocessing executable 'flowsim' for flowsim-0.3.5...
[ 1 of 10] Compiling HPLCount ( src/HPLCount.hs, dist/build/flowsim/flowsim-tmp/HPLCount.o )
[ 2 of 10] Compiling Version ( src/Version.hs, dist/build/flowsim/flowsim-tmp/Version.o )
[ 3 of 10] Compiling Statistics ( src/Statistics.hs, dist/build/flowsim/flowsim-tmp/Statistics.o )
[ 4 of 10] Compiling Generations.GenBase ( src/Generations/GenBase.hs, dist/build/flowsim/flowsim-tmp/Generations/GenBase.o )
[ 5 of 10] Compiling Generations.GS20 ( src/Generations/GS20.hs, dist/build/flowsim/flowsim-tmp/Generations/GS20.o )
[ 6 of 10] Compiling Generations.Titanium ( src/Generations/Titanium.hs, dist/build/flowsim/flowsim-tmp/Generations/Titanium.o )
src/Generations/Titanium.hs:4:1: Warning:
The qualified import of ‘Data.ByteString.Char8’ is redundant
except perhaps to import instances from ‘Data.ByteString.Char8’
To import instances alone, use: import Data.ByteString.Char8()
[ 7 of 10] Compiling EmpFile ( src/EmpFile.hs, dist/build/flowsim/flowsim-tmp/EmpFile.o )
[ 8 of 10] Compiling Generations.Empirical ( src/Generations/Empirical.hs, dist/build/flowsim/flowsim-tmp/Generations/Empirical.o )
src/Generations/Empirical.hs:3:1: Warning:
The qualified import of ‘Data.ByteString.Char8’ is redundant
except perhaps to import instances from ‘Data.ByteString.Char8’
To import instances alone, use: import Data.ByteString.Char8()
[ 9 of 10] Compiling Config ( src/Config.hs, dist/build/flowsim/flowsim-tmp/Config.o )
src/Config.hs:100:7: Warning: Defined but not used: ‘setG’
src/Config.hs:103:7: Warning: Defined but not used: ‘setF’
src/Config.hs:105:7: Warning: Defined but not used: ‘setT’
src/Config.hs:134:1: Warning:
Top-level binding with no type signature:
filterlist :: forall t. [t]
src/Config.hs:137:1: Warning:
Top-level binding with no type signature: trimlist :: forall t. [t]
[10 of 10] Compiling Main ( src/FlowSim.hs, dist/build/flowsim/flowsim-tmp/Main.o )
src/FlowSim.hs:156:50: Warning:
In the use of ‘seqlabel’ (imported from Bio.Core.Sequence):
Deprecated: "Warning: 'seqlabel' is deprecated, use 'seqid' or 'seqheader' instead."
src/FlowSim.hs:72:18: Warning:
Pattern match(es) are non-exhaustive
In a case alternative: Patterns not matched: []
Linking dist/build/flowsim/flowsim ...
Preprocessing executable 'hplc' for flowsim-0.3.5...
[1 of 1] Compiling HPLCount ( src/HPLCount.hs, dist/build/hplc/hplc-tmp/HPLCount.o )
Linking dist/build/hplc/hplc ...
Preprocessing executable 'clonesim' for flowsim-0.3.5...
[1 of 3] Compiling Version ( src/Version.hs, dist/build/clonesim/clonesim-tmp/Version.o )
[2 of 3] Compiling Statistics ( src/Statistics.hs, dist/build/clonesim/clonesim-tmp/Statistics.o )
[3 of 3] Compiling Main ( src/CloneSim.hs, dist/build/clonesim/clonesim-tmp/Main.o )
src/CloneSim.hs:115:1: Warning:
Top-level binding with no type signature:
defragSeq :: forall a. a -> a
src/CloneSim.hs:82:9: Warning:
Pattern match(es) are non-exhaustive
In an equation for ‘go’: Patterns not matched: (_, _)
Linking dist/build/clonesim/clonesim ...
Preprocessing executable 'kitsim' for flowsim-0.3.5...
[1 of 2] Compiling Version ( src/Version.hs, dist/build/kitsim/kitsim-tmp/Version.o )
[2 of 2] Compiling KitSim ( src/KitSim.hs, dist/build/kitsim/kitsim-tmp/KitSim.o )
Linking dist/build/kitsim/kitsim ...
Preprocessing executable 'mutator' for flowsim-0.3.5...
[1 of 3] Compiling Version ( src/Version.hs, dist/build/mutator/mutator-tmp/Version.o )
[2 of 3] Compiling Statistics ( src/Statistics.hs, dist/build/mutator/mutator-tmp/Statistics.o )
[3 of 3] Compiling Mutator ( src/Mutator.hs, dist/build/mutator/mutator-tmp/Mutator.o )
src/Mutator.hs:53:17: Warning:
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched:
ghc-prim:GHC.Types.I# #x with #x `notElem` [0#, 1#, 2#, 3#]
Linking dist/build/mutator/mutator ...
Preprocessing executable 'duplicator' for flowsim-0.3.5...
[1 of 2] Compiling Statistics ( src/Statistics.hs, dist/build/duplicator/duplicator-tmp/Statistics.o )
[2 of 2] Compiling Duplicator ( src/Duplicator.hs, dist/build/duplicator/duplicator-tmp/Duplicator.o )
src/Duplicator.hs:18:20: Warning:
Pattern match(es) are non-exhaustive
In a case alternative: Patterns not matched: _ : (_ : _)
Linking dist/build/duplicator/duplicator ...
Preprocessing executable 'gelfilter' for flowsim-0.3.5...
[1 of 1] Compiling GelFilter ( src/GelFilter.hs, dist/build/gelfilter/gelfilter-tmp/GelFilter.o )
src/GelFilter.hs:13:4: Warning:
This binding for ‘min’ shadows the existing binding
imported from ‘Prelude’ at src/GelFilter.hs:3:8-16
(and originally defined in ‘ghc-prim:GHC.Classes’)
src/GelFilter.hs:13:8: Warning:
This binding for ‘max’ shadows the existing binding
imported from ‘Prelude’ at src/GelFilter.hs:3:8-16
(and originally defined in ‘ghc-prim:GHC.Classes’)
Linking dist/build/gelfilter/gelfilter ...
Preprocessing executable 'filtersff' for flowsim-0.3.5...
[1 of 9] Compiling HPLCount ( src/HPLCount.hs, dist/build/filtersff/filtersff-tmp/HPLCount.o )
[2 of 9] Compiling Statistics ( src/Statistics.hs, dist/build/filtersff/filtersff-tmp/Statistics.o )
[3 of 9] Compiling EmpFile ( src/EmpFile.hs, dist/build/filtersff/filtersff-tmp/EmpFile.o )
[4 of 9] Compiling Generations.GenBase ( src/Generations/GenBase.hs, dist/build/filtersff/filtersff-tmp/Generations/GenBase.o )
[5 of 9] Compiling Generations.GS20 ( src/Generations/GS20.hs, dist/build/filtersff/filtersff-tmp/Generations/GS20.o )
[6 of 9] Compiling Generations.Titanium ( src/Generations/Titanium.hs, dist/build/filtersff/filtersff-tmp/Generations/Titanium.o )
src/Generations/Titanium.hs:4:1: Warning:
The qualified import of ‘Data.ByteString.Char8’ is redundant
except perhaps to import instances from ‘Data.ByteString.Char8’
To import instances alone, use: import Data.ByteString.Char8()
[7 of 9] Compiling Generations.Empirical ( src/Generations/Empirical.hs, dist/build/filtersff/filtersff-tmp/Generations/Empirical.o )
src/Generations/Empirical.hs:3:1: Warning:
The qualified import of ‘Data.ByteString.Char8’ is redundant
except perhaps to import instances from ‘Data.ByteString.Char8’
To import instances alone, use: import Data.ByteString.Char8()
[8 of 9] Compiling Version ( src/Version.hs, dist/build/filtersff/filtersff-tmp/Version.o )
[9 of 9] Compiling FilterSFF ( src/FilterSFF.hs, dist/build/filtersff/filtersff-tmp/FilterSFF.o )
Linking dist/build/filtersff/filtersff ...
Warning: No documentation was generated as this package does not contain a
library. Perhaps you want to use the --executables, --tests or --benchmarks
flags.
Installing executable(s) in
/home/builder/hackage-server/build-cache/tmp-install/bin
Warning: The directory
/home/builder/hackage-server/build-cache/tmp-install/bin is not in the system
search path.
Installed flowsim-0.3.5
Test log
No test log was submitted for this report.