Network.Google.Resource.Genomics.Reads.Search

Gets a list of reads for one or more read group sets. Reads search operates over a genomic coordinate space of reference sequence & position defined over the reference sequences to which the requested read group sets are aligned. If a target positional range is specified, search returns all reads whose alignment to the reference genome overlap the range. A query which specifies only read group set IDs yields all reads in those read group sets, including unmapped reads. All reads returned (including reads on subsequent pages) are ordered by genomic coordinate (reference sequence & position). Reads with equivalent genomic coordinates are returned in a deterministic order. Implements GlobalAllianceApi.searchReads.

See: API Reference for genomics.reads.search.

REST Resource

type ReadsSearchResource = "v1" :> ("reads" :> ("search" :> (QueryParam "$.xgafv" Text :> (QueryParam "upload_protocol" Text :> (QueryParam "pp" Bool :> (QueryParam "access_token" Text :> (QueryParam "uploadType" Text :> (QueryParam "bearer_token" Text :> (QueryParam "callback" Text :> (QueryParam "alt" AltJSON :> (ReqBody `[JSON]` SearchReadsRequest :> Post `[JSON]` SearchReadsResponse)))))))))))

A resource alias for genomics.reads.search method which the ReadsSearch request conforms to.

Creating a Request

readsSearch

Arguments

:: SearchReadsRequest

reaPayload

-> ReadsSearch

Creates a value of ReadsSearch with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• reaXgafv
• reaUploadProtocol
• reaPp
• reaAccessToken
• reaUploadType
• reaPayload
• reaBearerToken
• reaCallback

data ReadsSearch

Gets a list of reads for one or more read group sets. Reads search operates over a genomic coordinate space of reference sequence & position defined over the reference sequences to which the requested read group sets are aligned. If a target positional range is specified, search returns all reads whose alignment to the reference genome overlap the range. A query which specifies only read group set IDs yields all reads in those read group sets, including unmapped reads. All reads returned (including reads on subsequent pages) are ordered by genomic coordinate (reference sequence & position). Reads with equivalent genomic coordinates are returned in a deterministic order. Implements GlobalAllianceApi.searchReads.

See: readsSearch smart constructor.

Instances

Eq ReadsSearch

Data ReadsSearch

Show ReadsSearch

Generic ReadsSearch

GoogleRequest ReadsSearch

type Rep ReadsSearch

type Rs ReadsSearch = SearchReadsResponse

Request Lenses

reaXgafv :: Lens' ReadsSearch (Maybe Text)

V1 error format.

reaUploadProtocol :: Lens' ReadsSearch (Maybe Text)

Upload protocol for media (e.g. "raw", "multipart").

reaPp :: Lens' ReadsSearch Bool

Pretty-print response.

reaAccessToken :: Lens' ReadsSearch (Maybe Text)

OAuth access token.

reaUploadType :: Lens' ReadsSearch (Maybe Text)

Legacy upload protocol for media (e.g. "media", "multipart").

reaPayload :: Lens' ReadsSearch SearchReadsRequest

Multipart request metadata.

reaBearerToken :: Lens' ReadsSearch (Maybe Text)

OAuth bearer token.

reaCallback :: Lens' ReadsSearch (Maybe Text)

JSONP