Network.Google.Resource.Genomics.ReadGroupSets.Import

Creates read group sets by asynchronously importing the provided information. For the definitions of read group sets and other genomics resources, see Fundamentals of Google Genomics The caller must have WRITE permissions to the dataset. ## Notes on BAM import - Tags will be converted to strings - tag types are not preserved - Comments (`'CO`) in the input file header will not be preserved - Original header order of references (`'SQ`) will not be preserved - Any reverse stranded unmapped reads will be reverse complemented, and their qualities (also the "BQ" and "OQ" tags, if any) will be reversed - Unmapped reads will be stripped of positional information (reference name and position)

See: Genomics API Reference for genomics.readgroupsets.import.

REST Resource

type ReadGroupSetsImportResource = "v1" :> ("readgroupsets:import" :> (QueryParam "$.xgafv" Xgafv :> (QueryParam "upload_protocol" Text :> (QueryParam "pp" Bool :> (QueryParam "access_token" Text :> (QueryParam "uploadType" Text :> (QueryParam "bearer_token" Text :> (QueryParam "callback" Text :> (QueryParam "alt" AltJSON :> (ReqBody '[JSON] ImportReadGroupSetsRequest :> Post '[JSON] Operation))))))))))

A resource alias for genomics.readgroupsets.import method which the ReadGroupSetsImport request conforms to.

Creating a Request

readGroupSetsImport

Arguments

:: ImportReadGroupSetsRequest

rgsiPayload

-> ReadGroupSetsImport

Creates a value of ReadGroupSetsImport with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• rgsiXgafv
• rgsiUploadProtocol
• rgsiPp
• rgsiAccessToken
• rgsiUploadType
• rgsiPayload
• rgsiBearerToken
• rgsiCallback

data ReadGroupSetsImport

Creates read group sets by asynchronously importing the provided information. For the definitions of read group sets and other genomics resources, see Fundamentals of Google Genomics The caller must have WRITE permissions to the dataset. ## Notes on BAM import - Tags will be converted to strings - tag types are not preserved - Comments (`'CO`) in the input file header will not be preserved - Original header order of references (`'SQ`) will not be preserved - Any reverse stranded unmapped reads will be reverse complemented, and their qualities (also the "BQ" and "OQ" tags, if any) will be reversed - Unmapped reads will be stripped of positional information (reference name and position)

See: readGroupSetsImport smart constructor.

Instances

Eq ReadGroupSetsImport

Methods

(==) :: ReadGroupSetsImport -> ReadGroupSetsImport -> Bool

(/=) :: ReadGroupSetsImport -> ReadGroupSetsImport -> Bool

Data ReadGroupSetsImport

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReadGroupSetsImport -> c ReadGroupSetsImport

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReadGroupSetsImport

toConstr :: ReadGroupSetsImport -> Constr

dataTypeOf :: ReadGroupSetsImport -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ReadGroupSetsImport)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReadGroupSetsImport)

gmapT :: (forall b. Data b => b -> b) -> ReadGroupSetsImport -> ReadGroupSetsImport

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupSetsImport -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupSetsImport -> r

gmapQ :: (forall d. Data d => d -> u) -> ReadGroupSetsImport -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ReadGroupSetsImport -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReadGroupSetsImport -> m ReadGroupSetsImport

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupSetsImport -> m ReadGroupSetsImport

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupSetsImport -> m ReadGroupSetsImport

Show ReadGroupSetsImport

Methods

showsPrec :: Int -> ReadGroupSetsImport -> ShowS

show :: ReadGroupSetsImport -> String

showList :: [ReadGroupSetsImport] -> ShowS

Generic ReadGroupSetsImport

Associated Types

type Rep ReadGroupSetsImport :: * -> *

Methods

from :: ReadGroupSetsImport -> Rep ReadGroupSetsImport x

to :: Rep ReadGroupSetsImport x -> ReadGroupSetsImport

GoogleRequest ReadGroupSetsImport

Associated Types

type Rs ReadGroupSetsImport :: *

type Scopes ReadGroupSetsImport :: [Symbol]

Methods

requestClient :: ReadGroupSetsImport -> Client (Rs ReadGroupSetsImport)

type Rep ReadGroupSetsImport

type Rep ReadGroupSetsImport = D1 (MetaData "ReadGroupSetsImport" "Network.Google.Resource.Genomics.ReadGroupSets.Import" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ReadGroupSetsImport'" PrefixI True) ((:*:) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_rgsiXgafv") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Xgafv))) (S1 (MetaSel (Just Symbol "_rgsiUploadProtocol") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_rgsiPp") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 Bool)) (S1 (MetaSel (Just Symbol "_rgsiAccessToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_rgsiUploadType") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rgsiPayload") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ImportReadGroupSetsRequest))) ((:*:) (S1 (MetaSel (Just Symbol "_rgsiBearerToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rgsiCallback") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

type Scopes ReadGroupSetsImport

type Scopes ReadGroupSetsImport = (:) Symbol "https://www.googleapis.com/auth/cloud-platform" ((:) Symbol "https://www.googleapis.com/auth/devstorage.read_write" ((:) Symbol "https://www.googleapis.com/auth/genomics" ([] Symbol)))

type Rs ReadGroupSetsImport

type Rs ReadGroupSetsImport = Operation

Request Lenses

rgsiXgafv :: Lens' ReadGroupSetsImport (Maybe Xgafv)

V1 error format.

rgsiUploadProtocol :: Lens' ReadGroupSetsImport (Maybe Text)

Upload protocol for media (e.g. "raw", "multipart").

rgsiPp :: Lens' ReadGroupSetsImport Bool

Pretty-print response.

rgsiAccessToken :: Lens' ReadGroupSetsImport (Maybe Text)

OAuth access token.

rgsiUploadType :: Lens' ReadGroupSetsImport (Maybe Text)

Legacy upload protocol for media (e.g. "media", "multipart").

rgsiPayload :: Lens' ReadGroupSetsImport ImportReadGroupSetsRequest

Multipart request metadata.

rgsiBearerToken :: Lens' ReadGroupSetsImport (Maybe Text)

OAuth bearer token.

rgsiCallback :: Lens' ReadGroupSetsImport (Maybe Text)

JSONP