Network.Google.Resource.Genomics.Variants.Import

Creates variant data by asynchronously importing the provided information. For the definitions of variant sets and other genomics resources, see Fundamentals of Google Genomics The variants for import will be merged with any existing variant that matches its reference sequence, start, end, reference bases, and alternative bases. If no such variant exists, a new one will be created. When variants are merged, the call information from the new variant is added to the existing variant, and Variant info fields are merged as specified in infoMergeConfig. As a special case, for single-sample VCF files, QUAL and FILTER fields will be moved to the call level; these are sometimes interpreted in a call-specific context. Imported VCF headers are appended to the metadata already in a variant set.

See: Genomics API Reference for genomics.variants.import.

REST Resource

type VariantsImportResource = "v1" :> ("variants:import" :> (QueryParam "$.xgafv" Xgafv :> (QueryParam "upload_protocol" Text :> (QueryParam "pp" Bool :> (QueryParam "access_token" Text :> (QueryParam "uploadType" Text :> (QueryParam "bearer_token" Text :> (QueryParam "callback" Text :> (QueryParam "alt" AltJSON :> (ReqBody '[JSON] ImportVariantsRequest :> Post '[JSON] Operation))))))))))

A resource alias for genomics.variants.import method which the VariantsImport request conforms to.

Creating a Request

variantsImport

Arguments

:: ImportVariantsRequest

viPayload

-> VariantsImport

Creates a value of VariantsImport with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• viXgafv
• viUploadProtocol
• viPp
• viAccessToken
• viUploadType
• viPayload
• viBearerToken
• viCallback

data VariantsImport

Creates variant data by asynchronously importing the provided information. For the definitions of variant sets and other genomics resources, see Fundamentals of Google Genomics The variants for import will be merged with any existing variant that matches its reference sequence, start, end, reference bases, and alternative bases. If no such variant exists, a new one will be created. When variants are merged, the call information from the new variant is added to the existing variant, and Variant info fields are merged as specified in infoMergeConfig. As a special case, for single-sample VCF files, QUAL and FILTER fields will be moved to the call level; these are sometimes interpreted in a call-specific context. Imported VCF headers are appended to the metadata already in a variant set.

See: variantsImport smart constructor.

Instances

Eq VariantsImport

Methods

(==) :: VariantsImport -> VariantsImport -> Bool

(/=) :: VariantsImport -> VariantsImport -> Bool

Data VariantsImport

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantsImport -> c VariantsImport

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantsImport

toConstr :: VariantsImport -> Constr

dataTypeOf :: VariantsImport -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c VariantsImport)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantsImport)

gmapT :: (forall b. Data b => b -> b) -> VariantsImport -> VariantsImport

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantsImport -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantsImport -> r

gmapQ :: (forall d. Data d => d -> u) -> VariantsImport -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantsImport -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantsImport -> m VariantsImport

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantsImport -> m VariantsImport

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantsImport -> m VariantsImport

Show VariantsImport

Methods

showsPrec :: Int -> VariantsImport -> ShowS

show :: VariantsImport -> String

showList :: [VariantsImport] -> ShowS

Generic VariantsImport

Associated Types

type Rep VariantsImport :: * -> *

Methods

from :: VariantsImport -> Rep VariantsImport x

to :: Rep VariantsImport x -> VariantsImport

GoogleRequest VariantsImport

Associated Types

type Rs VariantsImport :: *

type Scopes VariantsImport :: [Symbol]

Methods

requestClient :: VariantsImport -> Client (Rs VariantsImport)

type Rep VariantsImport

type Rep VariantsImport = D1 (MetaData "VariantsImport" "Network.Google.Resource.Genomics.Variants.Import" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "VariantsImport'" PrefixI True) ((:*:) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_viXgafv") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Xgafv))) (S1 (MetaSel (Just Symbol "_viUploadProtocol") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_viPp") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 Bool)) (S1 (MetaSel (Just Symbol "_viAccessToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_viUploadType") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_viPayload") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ImportVariantsRequest))) ((:*:) (S1 (MetaSel (Just Symbol "_viBearerToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_viCallback") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

type Scopes VariantsImport

type Scopes VariantsImport = (:) Symbol "https://www.googleapis.com/auth/cloud-platform" ((:) Symbol "https://www.googleapis.com/auth/devstorage.read_write" ((:) Symbol "https://www.googleapis.com/auth/genomics" ([] Symbol)))

type Rs VariantsImport

type Rs VariantsImport = Operation

Request Lenses

viXgafv :: Lens' VariantsImport (Maybe Xgafv)

V1 error format.

viUploadProtocol :: Lens' VariantsImport (Maybe Text)

Upload protocol for media (e.g. "raw", "multipart").

viPp :: Lens' VariantsImport Bool

Pretty-print response.

viAccessToken :: Lens' VariantsImport (Maybe Text)

OAuth access token.

viUploadType :: Lens' VariantsImport (Maybe Text)

Legacy upload protocol for media (e.g. "media", "multipart").

viPayload :: Lens' VariantsImport ImportVariantsRequest

Multipart request metadata.

viBearerToken :: Lens' VariantsImport (Maybe Text)

OAuth bearer token.

viCallback :: Lens' VariantsImport (Maybe Text)

JSONP