Math.Clustering.Hierarchical.Spectral.Types

Documentation

type ClusteringTree a = Tree (ClusteringVertex a)

data ClusteringVertex a

Constructors

ClusteringVertex

Fields

• _clusteringItems :: !(Items a)
• _ngMod :: !Q

Instances

Eq a => Eq (ClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

Methods

(==) :: ClusteringVertex a -> ClusteringVertex a -> Bool

(/=) :: ClusteringVertex a -> ClusteringVertex a -> Bool

Ord a => Ord (ClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

Methods

compare :: ClusteringVertex a -> ClusteringVertex a -> Ordering

(<) :: ClusteringVertex a -> ClusteringVertex a -> Bool

(<=) :: ClusteringVertex a -> ClusteringVertex a -> Bool

(>) :: ClusteringVertex a -> ClusteringVertex a -> Bool

(>=) :: ClusteringVertex a -> ClusteringVertex a -> Bool

max :: ClusteringVertex a -> ClusteringVertex a -> ClusteringVertex a

min :: ClusteringVertex a -> ClusteringVertex a -> ClusteringVertex a

Read a => Read (ClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

Methods

readsPrec :: Int -> ReadS (ClusteringVertex a)

readList :: ReadS [ClusteringVertex a]

readPrec :: ReadPrec (ClusteringVertex a)

readListPrec :: ReadPrec [ClusteringVertex a]

Show a => Show (ClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

Methods

showsPrec :: Int -> ClusteringVertex a -> ShowS

show :: ClusteringVertex a -> String

showList :: [ClusteringVertex a] -> ShowS

Generic (ClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

Associated Types

type Rep (ClusteringVertex a) :: Type -> Type

Methods

from :: ClusteringVertex a -> Rep (ClusteringVertex a) x

to :: Rep (ClusteringVertex a) x -> ClusteringVertex a

type Rep (ClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

type Rep (ClusteringVertex a)

type GenericClusteringTree a = Tree (GenericClusteringVertex a)

data GenericClusteringVertex a

Constructors

GenericClusteringVertex

Fields

• _item :: !(Maybe (Items a))
• _distance :: !(Maybe Double)

Instances

Eq a => Eq (GenericClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

Methods

(==) :: GenericClusteringVertex a -> GenericClusteringVertex a -> Bool

(/=) :: GenericClusteringVertex a -> GenericClusteringVertex a -> Bool

Ord a => Ord (GenericClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

Methods

compare :: GenericClusteringVertex a -> GenericClusteringVertex a -> Ordering

(<) :: GenericClusteringVertex a -> GenericClusteringVertex a -> Bool

(<=) :: GenericClusteringVertex a -> GenericClusteringVertex a -> Bool

(>) :: GenericClusteringVertex a -> GenericClusteringVertex a -> Bool

(>=) :: GenericClusteringVertex a -> GenericClusteringVertex a -> Bool

max :: GenericClusteringVertex a -> GenericClusteringVertex a -> GenericClusteringVertex a

min :: GenericClusteringVertex a -> GenericClusteringVertex a -> GenericClusteringVertex a

Read a => Read (GenericClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

Methods

readsPrec :: Int -> ReadS (GenericClusteringVertex a)

readList :: ReadS [GenericClusteringVertex a]

readPrec :: ReadPrec (GenericClusteringVertex a)

readListPrec :: ReadPrec [GenericClusteringVertex a]

Show a => Show (GenericClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

Methods

showsPrec :: Int -> GenericClusteringVertex a -> ShowS

show :: GenericClusteringVertex a -> String

showList :: [GenericClusteringVertex a] -> ShowS

Generic (GenericClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

Associated Types

type Rep (GenericClusteringVertex a) :: Type -> Type

Methods

from :: GenericClusteringVertex a -> Rep (GenericClusteringVertex a) x

to :: Rep (GenericClusteringVertex a) x -> GenericClusteringVertex a

ToJSON a => ToJSON (GenericClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

Methods

toJSON :: GenericClusteringVertex a -> Value

toEncoding :: GenericClusteringVertex a -> Encoding

toJSONList :: [GenericClusteringVertex a] -> Value

toEncodingList :: [GenericClusteringVertex a] -> Encoding

FromJSON a => FromJSON (GenericClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

Methods

parseJSON :: Value -> Parser (GenericClusteringVertex a)

parseJSONList :: Value -> Parser [GenericClusteringVertex a]

type Rep (GenericClusteringVertex a)

Defined in Math.Clustering.Hierarchical.Spectral.Types

type Rep (GenericClusteringVertex a)

data EigenGroup

Constructors

SignGroup

KMeansGroup

Instances

Read EigenGroup

Defined in Math.Clustering.Hierarchical.Spectral.Types

Methods

readsPrec :: Int -> ReadS EigenGroup

readList :: ReadS [EigenGroup]

readPrec :: ReadPrec EigenGroup

readListPrec :: ReadPrec [EigenGroup]

Show EigenGroup

Defined in Math.Clustering.Hierarchical.Spectral.Types

Methods

showsPrec :: Int -> EigenGroup -> ShowS

show :: EigenGroup -> String

showList :: [EigenGroup] -> ShowS

Generic EigenGroup

Defined in Math.Clustering.Hierarchical.Spectral.Types

Associated Types

type Rep EigenGroup :: Type -> Type

Methods

from :: EigenGroup -> Rep EigenGroup x

to :: Rep EigenGroup x -> EigenGroup

type Rep EigenGroup

Defined in Math.Clustering.Hierarchical.Spectral.Types

type Rep EigenGroup = D1 (MetaData "EigenGroup" "Math.Clustering.Hierarchical.Spectral.Types" "hierarchical-spectral-clustering-0.4.0.1-AZ67eEPapYL5cgLc8HlARN" False) (C1 (MetaCons "SignGroup" PrefixI False) (U1 :: Type -> Type) :+: C1 (MetaCons "KMeansGroup" PrefixI False) (U1 :: Type -> Type))

clusteringTreeToDendrogram :: ClusteringTree a -> Dendrogram (Items a)

Convert a ClusteringTree to a Dendrogram. Modularity is the distance.

clusteringTreeToDendrogramCumulative :: ClusteringTree a -> Dendrogram (Items a)

Convert a ClusteringTree to a Dendrogram. Modularity is the distance, such that the distance is the modularity plus the maximum distance of each branch.

clusteringTreeToGenericClusteringTree :: ClusteringTree a -> GenericClusteringTree a

Convert a ClusteringTree to a GenericClusteringVertex tree (more standardized for our purposes).

getClusterItemsDend :: Foldable t => t (Items a) -> [Items a]

Gather clusters (leaves) from the dendrogram.

getClusterItemsTree :: ClusteringTree a -> [Items a]

Gather clusters (leaves) from the tree.

getClusterItemsGenericTree :: GenericClusteringTree a -> [Items a]

Gather clusters (leaves) from the generic tree.

newtype Q

Constructors

Q

Fields

• unQ :: Double

Instances

Eq Q

Defined in Math.Modularity.Types

Methods

(==) :: Q -> Q -> Bool

(/=) :: Q -> Q -> Bool

Num Q

Defined in Math.Modularity.Types

Methods

(+) :: Q -> Q -> Q

(-) :: Q -> Q -> Q

(*) :: Q -> Q -> Q

negate :: Q -> Q

abs :: Q -> Q

signum :: Q -> Q

fromInteger :: Integer -> Q

Ord Q

Defined in Math.Modularity.Types

Methods

compare :: Q -> Q -> Ordering

(<) :: Q -> Q -> Bool

(<=) :: Q -> Q -> Bool

(>) :: Q -> Q -> Bool

(>=) :: Q -> Q -> Bool

max :: Q -> Q -> Q

min :: Q -> Q -> Q

Read Q

Defined in Math.Modularity.Types

Methods

readsPrec :: Int -> ReadS Q

readList :: ReadS [Q]

readPrec :: ReadPrec Q

readListPrec :: ReadPrec [Q]

Show Q

Defined in Math.Modularity.Types

Methods

showsPrec :: Int -> Q -> ShowS

show :: Q -> String

showList :: [Q] -> ShowS

Generic Q

Defined in Math.Modularity.Types

Associated Types

type Rep Q :: Type -> Type

Methods

from :: Q -> Rep Q x

to :: Rep Q x -> Q

type Rep Q

Defined in Math.Modularity.Types

type Rep Q = D1 (MetaData "Q" "Math.Modularity.Types" "modularity-0.2.1.0-HLcugHyCzeR5PfyMl5fTt0" True) (C1 (MetaCons "Q" PrefixI True) (S1 (MetaSel (Just "unQ") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Double)))

type NumEigen = Int

Orphan instances

Read a => Read (Dendrogram a)

Methods

readsPrec :: Int -> ReadS (Dendrogram a)

readList :: ReadS [Dendrogram a]

readPrec :: ReadPrec (Dendrogram a)

readListPrec :: ReadPrec [Dendrogram a]

Generic (Dendrogram a)

Associated Types

type Rep (Dendrogram a) :: Type -> Type

Methods

from :: Dendrogram a -> Rep (Dendrogram a) x

to :: Rep (Dendrogram a) x -> Dendrogram a

ToJSON a => ToJSON (Dendrogram a)

Methods

toJSON :: Dendrogram a -> Value

toEncoding :: Dendrogram a -> Encoding

toJSONList :: [Dendrogram a] -> Value

toEncodingList :: [Dendrogram a] -> Encoding

FromJSON a => FromJSON (Dendrogram a)

Methods

parseJSON :: Value -> Parser (Dendrogram a)

parseJSONList :: Value -> Parser [Dendrogram a]