Data.BAM.Version1_6.BAM.Alignment.OptionalFields.ZOPT

WARNING

This module is considered internal.

The Package Versioning Policy does not apply.

The contents of this module may change in any way whatsoever and without any warning between minor versions of this package.

Authors importing this library are expected to track development closely.

All credit goes to the author(s)/maintainer(s) of the containers library for the above warning text.

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

BAM version 1.6 alignment optional fields data type

data BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT

Custom BAM (version 1.6) SAM_V1_6_Alignment_OptionalFields_ZOPT data type.

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT

Fields

• bam_v1_6_bam_alignment_optionalfields_zopt_tag :: ByteString
• bam_v1_6_bam_alignment_optionalfields_zopt_value :: Seq Word8

Instances

Generic BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.ZOPT

Associated Types

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT :: Type -> Type

Methods

from :: BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT x

to :: Rep BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT x -> BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT

Show BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.ZOPT

Methods

showsPrec :: Int -> BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT -> ShowS

show :: BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT -> String

showList :: [BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT] -> ShowS

Eq BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.ZOPT

Methods

(==) :: BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT -> BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT -> Bool

(/=) :: BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT -> BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT -> Bool

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.ZOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT = D1 ('MetaData "BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT" "Data.BAM.Version1_6.BAM.Alignment.OptionalFields.ZOPT" "hs-samtools-0.10.0.2-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_zopt_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_zopt_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Seq Word8))))