hs-samtools-0.10.0.3: Read and write SAM, BAM, and CRAM files.
Copyright(c) Matthew Mosior 2024
LicenseBSD-style
Maintainermattm.github@gmail.com
Portabilityportable
Safe HaskellSafe-Inferred
LanguageHaskell2010

Data.BAM.Version1_6.BAM.Header.PG

Description

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

Synopsis

BAM version 1.6 program data type

data BAM_V1_6_Program Source #

Custom BAM (version 1.6) BAM_V1_6_Program data type.

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_Program 

Fields

Instances

Instances details
Generic BAM_V1_6_Program Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Associated Types

type Rep BAM_V1_6_Program :: Type -> Type #

Methods

from :: BAM_V1_6_Program -> Rep BAM_V1_6_Program x #

to :: Rep BAM_V1_6_Program x -> BAM_V1_6_Program #

Show BAM_V1_6_Program Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

showsPrec :: Int -> BAM_V1_6_Program -> ShowS #

show :: BAM_V1_6_Program -> String #

showList :: [BAM_V1_6_Program] -> ShowS #

Eq BAM_V1_6_Program Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

(==) :: BAM_V1_6_Program -> BAM_V1_6_Program -> Bool #

(/=) :: BAM_V1_6_Program -> BAM_V1_6_Program -> Bool #

type Rep BAM_V1_6_Program Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

type Rep BAM_V1_6_Program = D1 ('MetaData "BAM_V1_6_Program" "Data.BAM.Version1_6.BAM.Header.PG" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_Program" 'PrefixI 'True) ((S1 ('MetaSel ('Just "bam_v1_6_program_record_identifier") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 BAM_V1_6_Program_Record_Identifier) :*: (S1 ('MetaSel ('Just "bam_v1_6_program_name") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Program_Name)) :*: S1 ('MetaSel ('Just "bam_v1_6_program_command_line") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Program_Command_Line)))) :*: (S1 ('MetaSel ('Just "bam_v1_6_program_previous_pg_id") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Program_Previous_PG_ID)) :*: (S1 ('MetaSel ('Just "bam_v1_6_program_description") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Program_Description)) :*: S1 ('MetaSel ('Just "bam_v1_6_program_version") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Program_Version))))))

BAM version 1.6 program data types

newtype BAM_V1_6_Program_Record_Identifier Source #

ID tag for BAM_V1_6_Program.

Constructors

BAM_V1_6_Program_Record_Identifier 

Fields

Instances

Instances details
Generic BAM_V1_6_Program_Record_Identifier Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Associated Types

type Rep BAM_V1_6_Program_Record_Identifier :: Type -> Type #

Methods

from :: BAM_V1_6_Program_Record_Identifier -> Rep BAM_V1_6_Program_Record_Identifier x #

to :: Rep BAM_V1_6_Program_Record_Identifier x -> BAM_V1_6_Program_Record_Identifier #

Show BAM_V1_6_Program_Record_Identifier Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

showsPrec :: Int -> BAM_V1_6_Program_Record_Identifier -> ShowS #

show :: BAM_V1_6_Program_Record_Identifier -> String #

showList :: [BAM_V1_6_Program_Record_Identifier] -> ShowS #

Eq BAM_V1_6_Program_Record_Identifier Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

(==) :: BAM_V1_6_Program_Record_Identifier -> BAM_V1_6_Program_Record_Identifier -> Bool #

(/=) :: BAM_V1_6_Program_Record_Identifier -> BAM_V1_6_Program_Record_Identifier -> Bool #

type Rep BAM_V1_6_Program_Record_Identifier Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

type Rep BAM_V1_6_Program_Record_Identifier = D1 ('MetaData "BAM_V1_6_Program_Record_Identifier" "Data.BAM.Version1_6.BAM.Header.PG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Program_Record_Identifier" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_program_record_identifier_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Program_Name Source #

PN tag for BAM_V1_6_Program.

Constructors

BAM_V1_6_Program_Name 

Fields

Instances

Instances details
Generic BAM_V1_6_Program_Name Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Associated Types

type Rep BAM_V1_6_Program_Name :: Type -> Type #

Methods

from :: BAM_V1_6_Program_Name -> Rep BAM_V1_6_Program_Name x #

to :: Rep BAM_V1_6_Program_Name x -> BAM_V1_6_Program_Name #

Show BAM_V1_6_Program_Name Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

showsPrec :: Int -> BAM_V1_6_Program_Name -> ShowS #

show :: BAM_V1_6_Program_Name -> String #

showList :: [BAM_V1_6_Program_Name] -> ShowS #

Eq BAM_V1_6_Program_Name Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

(==) :: BAM_V1_6_Program_Name -> BAM_V1_6_Program_Name -> Bool #

(/=) :: BAM_V1_6_Program_Name -> BAM_V1_6_Program_Name -> Bool #

type Rep BAM_V1_6_Program_Name Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

type Rep BAM_V1_6_Program_Name = D1 ('MetaData "BAM_V1_6_Program_Name" "Data.BAM.Version1_6.BAM.Header.PG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Program_Name" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_program_name_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Program_Command_Line Source #

CL tag for BAM_V1_6_Program.

Constructors

BAM_V1_6_Program_Command_Line 

Fields

Instances

Instances details
Generic BAM_V1_6_Program_Command_Line Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Associated Types

type Rep BAM_V1_6_Program_Command_Line :: Type -> Type #

Methods

from :: BAM_V1_6_Program_Command_Line -> Rep BAM_V1_6_Program_Command_Line x #

to :: Rep BAM_V1_6_Program_Command_Line x -> BAM_V1_6_Program_Command_Line #

Show BAM_V1_6_Program_Command_Line Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

showsPrec :: Int -> BAM_V1_6_Program_Command_Line -> ShowS #

show :: BAM_V1_6_Program_Command_Line -> String #

showList :: [BAM_V1_6_Program_Command_Line] -> ShowS #

Eq BAM_V1_6_Program_Command_Line Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

(==) :: BAM_V1_6_Program_Command_Line -> BAM_V1_6_Program_Command_Line -> Bool #

(/=) :: BAM_V1_6_Program_Command_Line -> BAM_V1_6_Program_Command_Line -> Bool #

type Rep BAM_V1_6_Program_Command_Line Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

type Rep BAM_V1_6_Program_Command_Line = D1 ('MetaData "BAM_V1_6_Program_Command_Line" "Data.BAM.Version1_6.BAM.Header.PG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Program_Command_Line" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_program_command_line_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Program_Previous_PG_ID Source #

PP tag for BAM_V1_6_Program.

Constructors

BAM_V1_6_Program_Previous_PG_ID 

Fields

Instances

Instances details
Generic BAM_V1_6_Program_Previous_PG_ID Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Associated Types

type Rep BAM_V1_6_Program_Previous_PG_ID :: Type -> Type #

Methods

from :: BAM_V1_6_Program_Previous_PG_ID -> Rep BAM_V1_6_Program_Previous_PG_ID x #

to :: Rep BAM_V1_6_Program_Previous_PG_ID x -> BAM_V1_6_Program_Previous_PG_ID #

Show BAM_V1_6_Program_Previous_PG_ID Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

showsPrec :: Int -> BAM_V1_6_Program_Previous_PG_ID -> ShowS #

show :: BAM_V1_6_Program_Previous_PG_ID -> String #

showList :: [BAM_V1_6_Program_Previous_PG_ID] -> ShowS #

Eq BAM_V1_6_Program_Previous_PG_ID Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

(==) :: BAM_V1_6_Program_Previous_PG_ID -> BAM_V1_6_Program_Previous_PG_ID -> Bool #

(/=) :: BAM_V1_6_Program_Previous_PG_ID -> BAM_V1_6_Program_Previous_PG_ID -> Bool #

type Rep BAM_V1_6_Program_Previous_PG_ID Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

type Rep BAM_V1_6_Program_Previous_PG_ID = D1 ('MetaData "BAM_V1_6_Program_Previous_PG_ID" "Data.BAM.Version1_6.BAM.Header.PG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Program_Previous_PG_ID" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_program_previous_pg_id_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Program_Description Source #

DS tag for BAM_V1_6_Program.

Constructors

BAM_V1_6_Program_Description 

Fields

Instances

Instances details
Generic BAM_V1_6_Program_Description Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Associated Types

type Rep BAM_V1_6_Program_Description :: Type -> Type #

Methods

from :: BAM_V1_6_Program_Description -> Rep BAM_V1_6_Program_Description x #

to :: Rep BAM_V1_6_Program_Description x -> BAM_V1_6_Program_Description #

Show BAM_V1_6_Program_Description Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

showsPrec :: Int -> BAM_V1_6_Program_Description -> ShowS #

show :: BAM_V1_6_Program_Description -> String #

showList :: [BAM_V1_6_Program_Description] -> ShowS #

Eq BAM_V1_6_Program_Description Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

(==) :: BAM_V1_6_Program_Description -> BAM_V1_6_Program_Description -> Bool #

(/=) :: BAM_V1_6_Program_Description -> BAM_V1_6_Program_Description -> Bool #

type Rep BAM_V1_6_Program_Description Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

type Rep BAM_V1_6_Program_Description = D1 ('MetaData "BAM_V1_6_Program_Description" "Data.BAM.Version1_6.BAM.Header.PG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Program_Description" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_program_description_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Program_Version Source #

VN tag for BAM_V1_6_Program.

Constructors

BAM_V1_6_Program_Version 

Fields

Instances

Instances details
Generic BAM_V1_6_Program_Version Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Associated Types

type Rep BAM_V1_6_Program_Version :: Type -> Type #

Methods

from :: BAM_V1_6_Program_Version -> Rep BAM_V1_6_Program_Version x #

to :: Rep BAM_V1_6_Program_Version x -> BAM_V1_6_Program_Version #

Show BAM_V1_6_Program_Version Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

showsPrec :: Int -> BAM_V1_6_Program_Version -> ShowS #

show :: BAM_V1_6_Program_Version -> String #

showList :: [BAM_V1_6_Program_Version] -> ShowS #

Eq BAM_V1_6_Program_Version Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

Methods

(==) :: BAM_V1_6_Program_Version -> BAM_V1_6_Program_Version -> Bool #

(/=) :: BAM_V1_6_Program_Version -> BAM_V1_6_Program_Version -> Bool #

type Rep BAM_V1_6_Program_Version Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.PG

type Rep BAM_V1_6_Program_Version = D1 ('MetaData "BAM_V1_6_Program_Version" "Data.BAM.Version1_6.BAM.Header.PG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Program_Version" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_program_version_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))