hs-samtools-0.10.0.3: Read and write SAM, BAM, and CRAM files.
Copyright(c) Matthew Mosior 2024
LicenseBSD-style
Maintainermattm.github@gmail.com
Portabilityportable
Safe HaskellSafe-Inferred
LanguageHaskell2010

Data.BAM.Version1_6.BAM.Header.RG

Description

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

Synopsis

BAM version 1.6 Read group data type

data BAM_V1_6_Read_Group Source #

Custom BAM (version 1.6) BAM_V1_6_Read_Group data type.

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_Read_Group 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group -> Rep BAM_V1_6_Read_Group x #

to :: Rep BAM_V1_6_Read_Group x -> BAM_V1_6_Read_Group #

Show BAM_V1_6_Read_Group Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group -> ShowS #

show :: BAM_V1_6_Read_Group -> String #

showList :: [BAM_V1_6_Read_Group] -> ShowS #

Eq BAM_V1_6_Read_Group Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group -> BAM_V1_6_Read_Group -> Bool #

(/=) :: BAM_V1_6_Read_Group -> BAM_V1_6_Read_Group -> Bool #

type Rep BAM_V1_6_Read_Group Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group = D1 ('MetaData "BAM_V1_6_Read_Group" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_Read_Group" 'PrefixI 'True) (((S1 ('MetaSel ('Just "bam_v1_6_read_group_identifier") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 BAM_V1_6_Read_Group_Identifier) :*: (S1 ('MetaSel ('Just "bam_v1_6_read_group_barcode_sequence") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Barcode_Sequence)) :*: S1 ('MetaSel ('Just "bam_v1_6_read_group_sequencing_center") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Sequencing_Center)))) :*: ((S1 ('MetaSel ('Just "bam_v1_6_read_group_description") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Description)) :*: S1 ('MetaSel ('Just "bam_v1_6_read_group_run_date") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Run_Date))) :*: (S1 ('MetaSel ('Just "bam_v1_6_read_group_flow_order") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Flow_Order)) :*: S1 ('MetaSel ('Just "bam_v1_6_read_group_key_sequence") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Key_Sequence))))) :*: ((S1 ('MetaSel ('Just "bam_v1_6_read_group_library") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Library)) :*: (S1 ('MetaSel ('Just "bam_v1_6_read_group_programs") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Programs)) :*: S1 ('MetaSel ('Just "bam_v1_6_read_group_predicted_median_insert_size") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Predicted_Median_Insert_Size)))) :*: ((S1 ('MetaSel ('Just "bam_v1_6_read_group_platform") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Platform)) :*: S1 ('MetaSel ('Just "bam_v1_6_read_group_platform_model") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Platform_Model))) :*: (S1 ('MetaSel ('Just "bam_v1_6_read_group_platform_unit") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Platform_Unit)) :*: S1 ('MetaSel ('Just "bam_v1_6_read_group_sample") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Read_Group_Sample)))))))

BAM version 1.6 Read group data types

newtype BAM_V1_6_Read_Group_Identifier Source #

ID tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Identifier 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Identifier Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Identifier :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Identifier -> Rep BAM_V1_6_Read_Group_Identifier x #

to :: Rep BAM_V1_6_Read_Group_Identifier x -> BAM_V1_6_Read_Group_Identifier #

Show BAM_V1_6_Read_Group_Identifier Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Identifier -> ShowS #

show :: BAM_V1_6_Read_Group_Identifier -> String #

showList :: [BAM_V1_6_Read_Group_Identifier] -> ShowS #

Eq BAM_V1_6_Read_Group_Identifier Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Identifier -> BAM_V1_6_Read_Group_Identifier -> Bool #

(/=) :: BAM_V1_6_Read_Group_Identifier -> BAM_V1_6_Read_Group_Identifier -> Bool #

type Rep BAM_V1_6_Read_Group_Identifier Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Identifier = D1 ('MetaData "BAM_V1_6_Read_Group_Identifier" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Identifier" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_identifier_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Barcode_Sequence Source #

BC tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Barcode_Sequence 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Barcode_Sequence Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Barcode_Sequence :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Barcode_Sequence -> Rep BAM_V1_6_Read_Group_Barcode_Sequence x #

to :: Rep BAM_V1_6_Read_Group_Barcode_Sequence x -> BAM_V1_6_Read_Group_Barcode_Sequence #

Show BAM_V1_6_Read_Group_Barcode_Sequence Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Barcode_Sequence -> ShowS #

show :: BAM_V1_6_Read_Group_Barcode_Sequence -> String #

showList :: [BAM_V1_6_Read_Group_Barcode_Sequence] -> ShowS #

Eq BAM_V1_6_Read_Group_Barcode_Sequence Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Barcode_Sequence -> BAM_V1_6_Read_Group_Barcode_Sequence -> Bool #

(/=) :: BAM_V1_6_Read_Group_Barcode_Sequence -> BAM_V1_6_Read_Group_Barcode_Sequence -> Bool #

type Rep BAM_V1_6_Read_Group_Barcode_Sequence Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Barcode_Sequence = D1 ('MetaData "BAM_V1_6_Read_Group_Barcode_Sequence" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Barcode_Sequence" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_barcode_sequence_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Sequencing_Center Source #

CN tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Sequencing_Center 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Sequencing_Center Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Sequencing_Center :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Sequencing_Center -> Rep BAM_V1_6_Read_Group_Sequencing_Center x #

to :: Rep BAM_V1_6_Read_Group_Sequencing_Center x -> BAM_V1_6_Read_Group_Sequencing_Center #

Show BAM_V1_6_Read_Group_Sequencing_Center Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Sequencing_Center -> ShowS #

show :: BAM_V1_6_Read_Group_Sequencing_Center -> String #

showList :: [BAM_V1_6_Read_Group_Sequencing_Center] -> ShowS #

Eq BAM_V1_6_Read_Group_Sequencing_Center Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Sequencing_Center -> BAM_V1_6_Read_Group_Sequencing_Center -> Bool #

(/=) :: BAM_V1_6_Read_Group_Sequencing_Center -> BAM_V1_6_Read_Group_Sequencing_Center -> Bool #

type Rep BAM_V1_6_Read_Group_Sequencing_Center Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Sequencing_Center = D1 ('MetaData "BAM_V1_6_Read_Group_Sequencing_Center" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Sequencing_Center" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_sequencing_center_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Description Source #

DS tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Description 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Description Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Description :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Description -> Rep BAM_V1_6_Read_Group_Description x #

to :: Rep BAM_V1_6_Read_Group_Description x -> BAM_V1_6_Read_Group_Description #

Show BAM_V1_6_Read_Group_Description Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Description -> ShowS #

show :: BAM_V1_6_Read_Group_Description -> String #

showList :: [BAM_V1_6_Read_Group_Description] -> ShowS #

Eq BAM_V1_6_Read_Group_Description Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Description -> BAM_V1_6_Read_Group_Description -> Bool #

(/=) :: BAM_V1_6_Read_Group_Description -> BAM_V1_6_Read_Group_Description -> Bool #

type Rep BAM_V1_6_Read_Group_Description Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Description = D1 ('MetaData "BAM_V1_6_Read_Group_Description" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Description" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_description_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Run_Date Source #

DT tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Run_Date 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Run_Date Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Run_Date :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Run_Date -> Rep BAM_V1_6_Read_Group_Run_Date x #

to :: Rep BAM_V1_6_Read_Group_Run_Date x -> BAM_V1_6_Read_Group_Run_Date #

Show BAM_V1_6_Read_Group_Run_Date Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Run_Date -> ShowS #

show :: BAM_V1_6_Read_Group_Run_Date -> String #

showList :: [BAM_V1_6_Read_Group_Run_Date] -> ShowS #

Eq BAM_V1_6_Read_Group_Run_Date Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Run_Date -> BAM_V1_6_Read_Group_Run_Date -> Bool #

(/=) :: BAM_V1_6_Read_Group_Run_Date -> BAM_V1_6_Read_Group_Run_Date -> Bool #

type Rep BAM_V1_6_Read_Group_Run_Date Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Run_Date = D1 ('MetaData "BAM_V1_6_Read_Group_Run_Date" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Run_Date" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_run_date_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Flow_Order Source #

FO tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Flow_Order 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Flow_Order Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Flow_Order :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Flow_Order -> Rep BAM_V1_6_Read_Group_Flow_Order x #

to :: Rep BAM_V1_6_Read_Group_Flow_Order x -> BAM_V1_6_Read_Group_Flow_Order #

Show BAM_V1_6_Read_Group_Flow_Order Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Flow_Order -> ShowS #

show :: BAM_V1_6_Read_Group_Flow_Order -> String #

showList :: [BAM_V1_6_Read_Group_Flow_Order] -> ShowS #

Eq BAM_V1_6_Read_Group_Flow_Order Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Flow_Order -> BAM_V1_6_Read_Group_Flow_Order -> Bool #

(/=) :: BAM_V1_6_Read_Group_Flow_Order -> BAM_V1_6_Read_Group_Flow_Order -> Bool #

type Rep BAM_V1_6_Read_Group_Flow_Order Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Flow_Order = D1 ('MetaData "BAM_V1_6_Read_Group_Flow_Order" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Flow_Order" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_flow_order_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Key_Sequence Source #

KS tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Key_Sequence 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Key_Sequence Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Key_Sequence :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Key_Sequence -> Rep BAM_V1_6_Read_Group_Key_Sequence x #

to :: Rep BAM_V1_6_Read_Group_Key_Sequence x -> BAM_V1_6_Read_Group_Key_Sequence #

Show BAM_V1_6_Read_Group_Key_Sequence Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Key_Sequence -> ShowS #

show :: BAM_V1_6_Read_Group_Key_Sequence -> String #

showList :: [BAM_V1_6_Read_Group_Key_Sequence] -> ShowS #

Eq BAM_V1_6_Read_Group_Key_Sequence Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Key_Sequence -> BAM_V1_6_Read_Group_Key_Sequence -> Bool #

(/=) :: BAM_V1_6_Read_Group_Key_Sequence -> BAM_V1_6_Read_Group_Key_Sequence -> Bool #

type Rep BAM_V1_6_Read_Group_Key_Sequence Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Key_Sequence = D1 ('MetaData "BAM_V1_6_Read_Group_Key_Sequence" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Key_Sequence" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_key_sequence_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Library Source #

LB tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Library 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Library Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Library :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Library -> Rep BAM_V1_6_Read_Group_Library x #

to :: Rep BAM_V1_6_Read_Group_Library x -> BAM_V1_6_Read_Group_Library #

Show BAM_V1_6_Read_Group_Library Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Library -> ShowS #

show :: BAM_V1_6_Read_Group_Library -> String #

showList :: [BAM_V1_6_Read_Group_Library] -> ShowS #

Eq BAM_V1_6_Read_Group_Library Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Library -> BAM_V1_6_Read_Group_Library -> Bool #

(/=) :: BAM_V1_6_Read_Group_Library -> BAM_V1_6_Read_Group_Library -> Bool #

type Rep BAM_V1_6_Read_Group_Library Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Library = D1 ('MetaData "BAM_V1_6_Read_Group_Library" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Library" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_library_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Programs Source #

PG tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Programs 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Programs Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Programs :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Programs -> Rep BAM_V1_6_Read_Group_Programs x #

to :: Rep BAM_V1_6_Read_Group_Programs x -> BAM_V1_6_Read_Group_Programs #

Show BAM_V1_6_Read_Group_Programs Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Programs -> ShowS #

show :: BAM_V1_6_Read_Group_Programs -> String #

showList :: [BAM_V1_6_Read_Group_Programs] -> ShowS #

Eq BAM_V1_6_Read_Group_Programs Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Programs -> BAM_V1_6_Read_Group_Programs -> Bool #

(/=) :: BAM_V1_6_Read_Group_Programs -> BAM_V1_6_Read_Group_Programs -> Bool #

type Rep BAM_V1_6_Read_Group_Programs Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Programs = D1 ('MetaData "BAM_V1_6_Read_Group_Programs" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Programs" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_programs_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source #

PI tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Predicted_Median_Insert_Size 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Predicted_Median_Insert_Size :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Rep BAM_V1_6_Read_Group_Predicted_Median_Insert_Size x #

to :: Rep BAM_V1_6_Read_Group_Predicted_Median_Insert_Size x -> BAM_V1_6_Read_Group_Predicted_Median_Insert_Size #

Show BAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> ShowS #

show :: BAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> String #

showList :: [BAM_V1_6_Read_Group_Predicted_Median_Insert_Size] -> ShowS #

Eq BAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> BAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Bool #

(/=) :: BAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> BAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Bool #

type Rep BAM_V1_6_Read_Group_Predicted_Median_Insert_Size Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Predicted_Median_Insert_Size = D1 ('MetaData "BAM_V1_6_Read_Group_Predicted_Median_Insert_Size" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Predicted_Median_Insert_Size" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_predicted_median_insert_size_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Platform Source #

PL tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Platform 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Platform Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Platform :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Platform -> Rep BAM_V1_6_Read_Group_Platform x #

to :: Rep BAM_V1_6_Read_Group_Platform x -> BAM_V1_6_Read_Group_Platform #

Show BAM_V1_6_Read_Group_Platform Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Platform -> ShowS #

show :: BAM_V1_6_Read_Group_Platform -> String #

showList :: [BAM_V1_6_Read_Group_Platform] -> ShowS #

Eq BAM_V1_6_Read_Group_Platform Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Platform -> BAM_V1_6_Read_Group_Platform -> Bool #

(/=) :: BAM_V1_6_Read_Group_Platform -> BAM_V1_6_Read_Group_Platform -> Bool #

type Rep BAM_V1_6_Read_Group_Platform Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Platform = D1 ('MetaData "BAM_V1_6_Read_Group_Platform" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Platform" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_platform_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Platform_Model Source #

PM tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Platform_Model 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Platform_Model Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Platform_Model :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Platform_Model -> Rep BAM_V1_6_Read_Group_Platform_Model x #

to :: Rep BAM_V1_6_Read_Group_Platform_Model x -> BAM_V1_6_Read_Group_Platform_Model #

Show BAM_V1_6_Read_Group_Platform_Model Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Platform_Model -> ShowS #

show :: BAM_V1_6_Read_Group_Platform_Model -> String #

showList :: [BAM_V1_6_Read_Group_Platform_Model] -> ShowS #

Eq BAM_V1_6_Read_Group_Platform_Model Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Platform_Model -> BAM_V1_6_Read_Group_Platform_Model -> Bool #

(/=) :: BAM_V1_6_Read_Group_Platform_Model -> BAM_V1_6_Read_Group_Platform_Model -> Bool #

type Rep BAM_V1_6_Read_Group_Platform_Model Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Platform_Model = D1 ('MetaData "BAM_V1_6_Read_Group_Platform_Model" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Platform_Model" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_platform_model_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Platform_Unit Source #

PU tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Platform_Unit 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Platform_Unit Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Platform_Unit :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Platform_Unit -> Rep BAM_V1_6_Read_Group_Platform_Unit x #

to :: Rep BAM_V1_6_Read_Group_Platform_Unit x -> BAM_V1_6_Read_Group_Platform_Unit #

Show BAM_V1_6_Read_Group_Platform_Unit Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Platform_Unit -> ShowS #

show :: BAM_V1_6_Read_Group_Platform_Unit -> String #

showList :: [BAM_V1_6_Read_Group_Platform_Unit] -> ShowS #

Eq BAM_V1_6_Read_Group_Platform_Unit Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Platform_Unit -> BAM_V1_6_Read_Group_Platform_Unit -> Bool #

(/=) :: BAM_V1_6_Read_Group_Platform_Unit -> BAM_V1_6_Read_Group_Platform_Unit -> Bool #

type Rep BAM_V1_6_Read_Group_Platform_Unit Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Platform_Unit = D1 ('MetaData "BAM_V1_6_Read_Group_Platform_Unit" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Platform_Unit" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_platform_unit_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Read_Group_Sample Source #

SM tag for BAM_V1_6_Read_Group.

Constructors

BAM_V1_6_Read_Group_Sample 

Fields

Instances

Instances details
Generic BAM_V1_6_Read_Group_Sample Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Associated Types

type Rep BAM_V1_6_Read_Group_Sample :: Type -> Type #

Methods

from :: BAM_V1_6_Read_Group_Sample -> Rep BAM_V1_6_Read_Group_Sample x #

to :: Rep BAM_V1_6_Read_Group_Sample x -> BAM_V1_6_Read_Group_Sample #

Show BAM_V1_6_Read_Group_Sample Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

showsPrec :: Int -> BAM_V1_6_Read_Group_Sample -> ShowS #

show :: BAM_V1_6_Read_Group_Sample -> String #

showList :: [BAM_V1_6_Read_Group_Sample] -> ShowS #

Eq BAM_V1_6_Read_Group_Sample Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

Methods

(==) :: BAM_V1_6_Read_Group_Sample -> BAM_V1_6_Read_Group_Sample -> Bool #

(/=) :: BAM_V1_6_Read_Group_Sample -> BAM_V1_6_Read_Group_Sample -> Bool #

type Rep BAM_V1_6_Read_Group_Sample Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Header.RG

type Rep BAM_V1_6_Read_Group_Sample = D1 ('MetaData "BAM_V1_6_Read_Group_Sample" "Data.BAM.Version1_6.BAM.Header.RG" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Read_Group_Sample" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_read_group_sample_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))