Copyright	(c) Matthew Mosior 2024
License	BSD-style
Maintainer	mattm.github@gmail.com
Portability	portable
Safe Haskell	Safe-Inferred
Language	Haskell2010

Data.BAM.Version1_6.BAM.Header.SQ

Contents

BAM version 1.6 Reference sequence dictionary data type
BAM version 1.6 Reference sequence dictionary data types

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

Synopsis

data BAM_V1_6_Reference_Sequence_Dictionary = BAM_V1_6_Reference_Sequence_Dictionary {
}
newtype BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name = BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name {
- bam_v1_6_reference_sequence_dictionary_reference_sequence_name_value :: ByteString
}
newtype BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length = BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length {
- bam_v1_6_reference_sequence_dictionary_reference_sequence_length_value :: ByteString
}
newtype BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus = BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus {
- bam_v1_6_reference_sequence_dictionary_alternative_locus_value :: ByteString
}
newtype BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names = BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names {
- bam_v1_6_reference_sequence_dictionary_alternative_reference_sequence_names_value :: ByteString
}
newtype BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier = BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier {
- bam_v1_6_reference_sequence_dictionary_genome_assembly_identifier_value :: ByteString
}
newtype BAM_V1_6_Reference_Sequence_Dictionary_Description = BAM_V1_6_Reference_Sequence_Dictionary_Description {
- bam_v1_6_reference_sequence_dictionary_description_value :: ByteString
}
newtype BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum = BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum {
- bam_v1_6_reference_sequence_dictionary_md5_checksum_value :: ByteString
}
newtype BAM_V1_6_Reference_Sequence_Dictionary_Species = BAM_V1_6_Reference_Sequence_Dictionary_Species {
- bam_v1_6_reference_sequence_dictionary_species_value :: ByteString
}
newtype BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology = BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology {
- bam_v1_6_reference_sequence_dictionary_molecule_topology_value :: ByteString
}
newtype BAM_V1_6_Reference_Sequence_Dictionary_URI = BAM_V1_6_Reference_Sequence_Dictionary_URI {
- bam_v1_6_reference_sequence_dictionary_uri_value :: ByteString
}

BAM version 1.6 Reference sequence dictionary data type

data BAM_V1_6_Reference_Sequence_Dictionary Source #

Custom BAM (version 1.6) BAM_V1_6_Reference_Sequence_Dictionary data type.

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_Reference_Sequence_Dictionary

Fields

Instances

Instances details

Generic BAM_V1_6_Reference_Sequence_Dictionary Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Associated Types type Rep BAM_V1_6_Reference_Sequence_Dictionary :: Type -> Type # Methods from :: BAM_V1_6_Reference_Sequence_Dictionary -> Rep BAM_V1_6_Reference_Sequence_Dictionary x # to :: Rep BAM_V1_6_Reference_Sequence_Dictionary x -> BAM_V1_6_Reference_Sequence_Dictionary #
Show BAM_V1_6_Reference_Sequence_Dictionary Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods showsPrec :: Int -> BAM_V1_6_Reference_Sequence_Dictionary -> ShowS # show :: BAM_V1_6_Reference_Sequence_Dictionary -> String # showList :: [BAM_V1_6_Reference_Sequence_Dictionary] -> ShowS #
Eq BAM_V1_6_Reference_Sequence_Dictionary Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods (==) :: BAM_V1_6_Reference_Sequence_Dictionary -> BAM_V1_6_Reference_Sequence_Dictionary -> Bool # (/=) :: BAM_V1_6_Reference_Sequence_Dictionary -> BAM_V1_6_Reference_Sequence_Dictionary -> Bool #
type Rep BAM_V1_6_Reference_Sequence_Dictionary Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ type Rep BAM_V1_6_Reference_Sequence_Dictionary = D1 ('MetaData "BAM_V1_6_Reference_Sequence_Dictionary" "Data.BAM.Version1_6.BAM.Header.SQ" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_Reference_Sequence_Dictionary" 'PrefixI 'True) (((S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_reference_sequence_name") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name) :: S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_reference_sequence_length") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length)) :: (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_alternative_locus") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus)) :: (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_alternative_reference_sequence_names") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names)) :: S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_genome_assembly_identifier") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier))))) :: ((S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_description") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Reference_Sequence_Dictionary_Description)) :: S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_md5_checksum") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum))) :: (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_species") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Reference_Sequence_Dictionary_Species)) :: (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_molecule_topology") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology)) :*: S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_uri") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_Reference_Sequence_Dictionary_URI)))))))

BAM version 1.6 Reference sequence dictionary data types

newtype BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name Source #

SN tag for BAM_V1_6_Reference_Sequence_Dictionary.

Constructors

BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name
Fields bam_v1_6_reference_sequence_dictionary_reference_sequence_name_value :: ByteString

Instances

Instances details

Generic BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Associated Types type Rep BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name :: Type -> Type # Methods from :: BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> Rep BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name x # to :: Rep BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name x -> BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name #
Show BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods showsPrec :: Int -> BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> ShowS # show :: BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> String # showList :: [BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name] -> ShowS #
Eq BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods (==) :: BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> Bool # (/=) :: BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name -> Bool #
type Rep BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ type Rep BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name = D1 ('MetaData "BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name" "Data.BAM.Version1_6.BAM.Header.SQ" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_reference_sequence_name_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length Source #

LN tag for BAM_V1_6_Reference_Sequence_Dictionary.

Constructors

BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length
Fields bam_v1_6_reference_sequence_dictionary_reference_sequence_length_value :: ByteString

Instances

Instances details

Generic BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Associated Types type Rep BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length :: Type -> Type # Methods from :: BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> Rep BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length x # to :: Rep BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length x -> BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length #
Show BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods showsPrec :: Int -> BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> ShowS # show :: BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> String # showList :: [BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length] -> ShowS #
Eq BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods (==) :: BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> Bool # (/=) :: BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length -> Bool #
type Rep BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ type Rep BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length = D1 ('MetaData "BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length" "Data.BAM.Version1_6.BAM.Header.SQ" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_reference_sequence_length_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus Source #

AH tag for BAM_V1_6_Reference_Sequence_Dictionary.

Constructors

BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus
Fields bam_v1_6_reference_sequence_dictionary_alternative_locus_value :: ByteString

Instances

Instances details

Generic BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Associated Types type Rep BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus :: Type -> Type # Methods from :: BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> Rep BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus x # to :: Rep BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus x -> BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus #
Show BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods showsPrec :: Int -> BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> ShowS # show :: BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> String # showList :: [BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus] -> ShowS #
Eq BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods (==) :: BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> Bool # (/=) :: BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus -> Bool #
type Rep BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ type Rep BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus = D1 ('MetaData "BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus" "Data.BAM.Version1_6.BAM.Header.SQ" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_alternative_locus_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names Source #

AN tag for BAM_V1_6_Reference_Sequence_Dictionary.

Constructors

BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names
Fields bam_v1_6_reference_sequence_dictionary_alternative_reference_sequence_names_value :: ByteString

Instances

Instances details

Generic BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Associated Types type Rep BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names :: Type -> Type # Methods from :: BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> Rep BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names x # to :: Rep BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names x -> BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names #
Show BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods showsPrec :: Int -> BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> ShowS # show :: BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> String # showList :: [BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names] -> ShowS #
Eq BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods (==) :: BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> Bool # (/=) :: BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names -> Bool #
type Rep BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ type Rep BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names = D1 ('MetaData "BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names" "Data.BAM.Version1_6.BAM.Header.SQ" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_alternative_reference_sequence_names_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier Source #

AS tag for BAM_V1_6_Reference_Sequence_Dictionary.

Constructors

BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier
Fields bam_v1_6_reference_sequence_dictionary_genome_assembly_identifier_value :: ByteString

Instances

Instances details

Generic BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Associated Types type Rep BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier :: Type -> Type # Methods from :: BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> Rep BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier x # to :: Rep BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier x -> BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier #
Show BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods showsPrec :: Int -> BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> ShowS # show :: BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> String # showList :: [BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier] -> ShowS #
Eq BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods (==) :: BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> Bool # (/=) :: BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier -> Bool #
type Rep BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ type Rep BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier = D1 ('MetaData "BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier" "Data.BAM.Version1_6.BAM.Header.SQ" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_genome_assembly_identifier_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Reference_Sequence_Dictionary_Description Source #

DS tag for BAM_V1_6_Reference_Sequence_Dictionary.

Constructors

BAM_V1_6_Reference_Sequence_Dictionary_Description
Fields bam_v1_6_reference_sequence_dictionary_description_value :: ByteString

Instances

Instances details

Generic BAM_V1_6_Reference_Sequence_Dictionary_Description Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Associated Types type Rep BAM_V1_6_Reference_Sequence_Dictionary_Description :: Type -> Type # Methods from :: BAM_V1_6_Reference_Sequence_Dictionary_Description -> Rep BAM_V1_6_Reference_Sequence_Dictionary_Description x # to :: Rep BAM_V1_6_Reference_Sequence_Dictionary_Description x -> BAM_V1_6_Reference_Sequence_Dictionary_Description #
Show BAM_V1_6_Reference_Sequence_Dictionary_Description Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods showsPrec :: Int -> BAM_V1_6_Reference_Sequence_Dictionary_Description -> ShowS # show :: BAM_V1_6_Reference_Sequence_Dictionary_Description -> String # showList :: [BAM_V1_6_Reference_Sequence_Dictionary_Description] -> ShowS #
Eq BAM_V1_6_Reference_Sequence_Dictionary_Description Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods (==) :: BAM_V1_6_Reference_Sequence_Dictionary_Description -> BAM_V1_6_Reference_Sequence_Dictionary_Description -> Bool # (/=) :: BAM_V1_6_Reference_Sequence_Dictionary_Description -> BAM_V1_6_Reference_Sequence_Dictionary_Description -> Bool #
type Rep BAM_V1_6_Reference_Sequence_Dictionary_Description Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ type Rep BAM_V1_6_Reference_Sequence_Dictionary_Description = D1 ('MetaData "BAM_V1_6_Reference_Sequence_Dictionary_Description" "Data.BAM.Version1_6.BAM.Header.SQ" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Reference_Sequence_Dictionary_Description" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_description_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum Source #

M5 tag for BAM_V1_6_Reference_Sequence_Dictionary.

Constructors

BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum
Fields bam_v1_6_reference_sequence_dictionary_md5_checksum_value :: ByteString

Instances

Instances details

Generic BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Associated Types type Rep BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum :: Type -> Type # Methods from :: BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> Rep BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum x # to :: Rep BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum x -> BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum #
Show BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods showsPrec :: Int -> BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> ShowS # show :: BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> String # showList :: [BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum] -> ShowS #
Eq BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods (==) :: BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> Bool # (/=) :: BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum -> Bool #
type Rep BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ type Rep BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum = D1 ('MetaData "BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum" "Data.BAM.Version1_6.BAM.Header.SQ" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_md5_checksum_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Reference_Sequence_Dictionary_Species Source #

SP tag for BAM_V1_6_Reference_Sequence_Dictionary.

Constructors

BAM_V1_6_Reference_Sequence_Dictionary_Species
Fields bam_v1_6_reference_sequence_dictionary_species_value :: ByteString

Instances

Instances details

Generic BAM_V1_6_Reference_Sequence_Dictionary_Species Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Associated Types type Rep BAM_V1_6_Reference_Sequence_Dictionary_Species :: Type -> Type # Methods from :: BAM_V1_6_Reference_Sequence_Dictionary_Species -> Rep BAM_V1_6_Reference_Sequence_Dictionary_Species x # to :: Rep BAM_V1_6_Reference_Sequence_Dictionary_Species x -> BAM_V1_6_Reference_Sequence_Dictionary_Species #
Show BAM_V1_6_Reference_Sequence_Dictionary_Species Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods showsPrec :: Int -> BAM_V1_6_Reference_Sequence_Dictionary_Species -> ShowS # show :: BAM_V1_6_Reference_Sequence_Dictionary_Species -> String # showList :: [BAM_V1_6_Reference_Sequence_Dictionary_Species] -> ShowS #
Eq BAM_V1_6_Reference_Sequence_Dictionary_Species Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods (==) :: BAM_V1_6_Reference_Sequence_Dictionary_Species -> BAM_V1_6_Reference_Sequence_Dictionary_Species -> Bool # (/=) :: BAM_V1_6_Reference_Sequence_Dictionary_Species -> BAM_V1_6_Reference_Sequence_Dictionary_Species -> Bool #
type Rep BAM_V1_6_Reference_Sequence_Dictionary_Species Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ type Rep BAM_V1_6_Reference_Sequence_Dictionary_Species = D1 ('MetaData "BAM_V1_6_Reference_Sequence_Dictionary_Species" "Data.BAM.Version1_6.BAM.Header.SQ" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Reference_Sequence_Dictionary_Species" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_species_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology Source #

TP tag for BAM_V1_6_Reference_Sequence_Dictionary.

Constructors

BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology
Fields bam_v1_6_reference_sequence_dictionary_molecule_topology_value :: ByteString

Instances

Instances details

Generic BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Associated Types type Rep BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology :: Type -> Type # Methods from :: BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> Rep BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology x # to :: Rep BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology x -> BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology #
Show BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods showsPrec :: Int -> BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> ShowS # show :: BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> String # showList :: [BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology] -> ShowS #
Eq BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods (==) :: BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> Bool # (/=) :: BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology -> Bool #
type Rep BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ type Rep BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology = D1 ('MetaData "BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology" "Data.BAM.Version1_6.BAM.Header.SQ" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_molecule_topology_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype BAM_V1_6_Reference_Sequence_Dictionary_URI Source #

UR tag for BAM_V1_6_Reference_Sequence_Dictionary.

Constructors

BAM_V1_6_Reference_Sequence_Dictionary_URI
Fields bam_v1_6_reference_sequence_dictionary_uri_value :: ByteString

Instances

Instances details

Generic BAM_V1_6_Reference_Sequence_Dictionary_URI Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Associated Types type Rep BAM_V1_6_Reference_Sequence_Dictionary_URI :: Type -> Type # Methods from :: BAM_V1_6_Reference_Sequence_Dictionary_URI -> Rep BAM_V1_6_Reference_Sequence_Dictionary_URI x # to :: Rep BAM_V1_6_Reference_Sequence_Dictionary_URI x -> BAM_V1_6_Reference_Sequence_Dictionary_URI #
Show BAM_V1_6_Reference_Sequence_Dictionary_URI Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods showsPrec :: Int -> BAM_V1_6_Reference_Sequence_Dictionary_URI -> ShowS # show :: BAM_V1_6_Reference_Sequence_Dictionary_URI -> String # showList :: [BAM_V1_6_Reference_Sequence_Dictionary_URI] -> ShowS #
Eq BAM_V1_6_Reference_Sequence_Dictionary_URI Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ Methods (==) :: BAM_V1_6_Reference_Sequence_Dictionary_URI -> BAM_V1_6_Reference_Sequence_Dictionary_URI -> Bool # (/=) :: BAM_V1_6_Reference_Sequence_Dictionary_URI -> BAM_V1_6_Reference_Sequence_Dictionary_URI -> Bool #
type Rep BAM_V1_6_Reference_Sequence_Dictionary_URI Source #
Instance details Defined in Data.BAM.Version1_6.BAM.Header.SQ type Rep BAM_V1_6_Reference_Sequence_Dictionary_URI = D1 ('MetaData "BAM_V1_6_Reference_Sequence_Dictionary_URI" "Data.BAM.Version1_6.BAM.Header.SQ" "hs-samtools-0.10.0.3-inplace" 'True) (C1 ('MetaCons "BAM_V1_6_Reference_Sequence_Dictionary_URI" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_reference_sequence_dictionary_uri_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))