Copyright	(c) Matthew Mosior 2024
License	BSD-style
Maintainer	mattm.github@gmail.com
Portability	portable
Safe Haskell	Safe-Inferred
Language	Haskell2010

Data.BAM.Version1_6.GZipHeader

Contents

BAM_V1_6_GZipHeader version 1.6 data type

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

Synopsis

data BAM_V1_6_GZipHeader = BAM_V1_6_GZipHeader {
}

BAM_V1_6_GZipHeader version 1.6 data type

data BAM_V1_6_GZipHeader Source #

Custom BAM_V1_6_GZipHeader (BAM version 1.6) data type.

See the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_GZipHeader

Fields

bam_v1_6_gzip_header_gzip_identifier_1 :: Word8
Magic number 1f (0x1f).
bam_v1_6_gzip_header_gzip_identifier_2 :: Word8
Magic number 08 (0x08).
bam_v1_6_gzip_header_compression_method :: Word8
Compression method (08 for DEFLATE).
bam_v1_6_gzip_header_header_flags :: Word8
1-byte for header flags.
bam_v1_6_gzip_header_modification_time :: Word32
4-byte timestamp.
bam_v1_6_gzip_header_extra_flags :: Word8
1-byte eXtra FLags.
bam_v1_6_gzip_header_operating_system :: Word8
The operating system id.
bam_v1_6_gzip_header_extra_length :: Word16
If FLG.FEXTRA is set, this gives the length of the optional extra field.

Instances

Instances details

Generic BAM_V1_6_GZipHeader Source #
Instance details Defined in Data.BAM.Version1_6.GZipHeader Associated Types type Rep BAM_V1_6_GZipHeader :: Type -> Type # Methods from :: BAM_V1_6_GZipHeader -> Rep BAM_V1_6_GZipHeader x # to :: Rep BAM_V1_6_GZipHeader x -> BAM_V1_6_GZipHeader #
Show BAM_V1_6_GZipHeader Source #
Instance details Defined in Data.BAM.Version1_6.GZipHeader Methods showsPrec :: Int -> BAM_V1_6_GZipHeader -> ShowS # show :: BAM_V1_6_GZipHeader -> String # showList :: [BAM_V1_6_GZipHeader] -> ShowS #
Eq BAM_V1_6_GZipHeader Source #
Instance details Defined in Data.BAM.Version1_6.GZipHeader Methods (==) :: BAM_V1_6_GZipHeader -> BAM_V1_6_GZipHeader -> Bool # (/=) :: BAM_V1_6_GZipHeader -> BAM_V1_6_GZipHeader -> Bool #
type Rep BAM_V1_6_GZipHeader Source #
Instance details Defined in Data.BAM.Version1_6.GZipHeader type Rep BAM_V1_6_GZipHeader = D1 ('MetaData "BAM_V1_6_GZipHeader" "Data.BAM.Version1_6.GZipHeader" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_GZipHeader" 'PrefixI 'True) (((S1 ('MetaSel ('Just "bam_v1_6_gzip_header_gzip_identifier_1") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word8) :: S1 ('MetaSel ('Just "bam_v1_6_gzip_header_gzip_identifier_2") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word8)) :: (S1 ('MetaSel ('Just "bam_v1_6_gzip_header_compression_method") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word8) :: S1 ('MetaSel ('Just "bam_v1_6_gzip_header_header_flags") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word8))) :: ((S1 ('MetaSel ('Just "bam_v1_6_gzip_header_modification_time") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word32) :: S1 ('MetaSel ('Just "bam_v1_6_gzip_header_extra_flags") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word8)) :: (S1 ('MetaSel ('Just "bam_v1_6_gzip_header_operating_system") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word8) :*: S1 ('MetaSel ('Just "bam_v1_6_gzip_header_extra_length") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word16)))))