Copyright	(c) Matthew Mosior 2024
License	BSD-style
Maintainer	mattm.github@gmail.com
Portability	portable
Safe Haskell	Safe-Inferred
Language	Haskell2010

Data.SAM.Version1_6.Alignment.OptionalFields.Base

Contents

SAM version 1.6 alignment optional data types

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

SAM version 1.6 alignment optional data types

data SAM_V1_6_Alignment_OptionalFields Source #

Custom SAM (version 1.6) SAM_V1_6_Alignment_OptionalFields data type.

See section 1.4 and 1.5 of the SAM v1.6 specification documentation.

Constructors

SAM_V1_6_Alignment_OptionalFields

Fields

sam_v1_6_alignment_optionalfields_aopt :: Maybe SAM_V1_6_Alignment_OptionalFields_AOPT
A - [!-~] - Printable characters.
sam_v1_6_alignment_optionalfields_iopt :: Maybe SAM_V1_6_Alignment_OptionalFields_IOPT
i - [-+]?[0-9]+ - Signed integer.
sam_v1_6_alignment_optionalfields_fopt :: Maybe SAM_V1_6_Alignment_OptionalFields_FOPT
f - [-+]?[0-9]*.?[0-9]+([eE][-+]?[0-9]+)? - Single-precision floating number.
sam_v1_6_alignment_optionalfields_zopt :: Maybe SAM_V1_6_Alignment_OptionalFields_ZOPT
Z - [ !-~]* - Printable string, including space.
sam_v1_6_alignment_optionalfields_hopt :: Maybe SAM_V1_6_Alignment_OptionalFields_HOPT
H - ([0-9A-F][0-9A-F])* - Byte array in the Hex format.
sam_v1_6_alignment_optionalfields_bopt :: Maybe SAM_V1_6_Alignment_OptionalFields_BOPT
B - [cCsSiIf](,[-+]?[0-9]*.?[0-9]+([eE][-+]?[0-9]+)?)* - Integer or numeric array.

Instances

Instances details

Generic SAM_V1_6_Alignment_OptionalFields Source #
Instance details Defined in Data.SAM.Version1_6.Alignment.OptionalFields.Base Associated Types type Rep SAM_V1_6_Alignment_OptionalFields :: Type -> Type # Methods from :: SAM_V1_6_Alignment_OptionalFields -> Rep SAM_V1_6_Alignment_OptionalFields x # to :: Rep SAM_V1_6_Alignment_OptionalFields x -> SAM_V1_6_Alignment_OptionalFields #
Show SAM_V1_6_Alignment_OptionalFields Source #
Instance details Defined in Data.SAM.Version1_6.Alignment.OptionalFields.Base Methods showsPrec :: Int -> SAM_V1_6_Alignment_OptionalFields -> ShowS # show :: SAM_V1_6_Alignment_OptionalFields -> String # showList :: [SAM_V1_6_Alignment_OptionalFields] -> ShowS #
Eq SAM_V1_6_Alignment_OptionalFields Source #
Instance details Defined in Data.SAM.Version1_6.Alignment.OptionalFields.Base Methods (==) :: SAM_V1_6_Alignment_OptionalFields -> SAM_V1_6_Alignment_OptionalFields -> Bool # (/=) :: SAM_V1_6_Alignment_OptionalFields -> SAM_V1_6_Alignment_OptionalFields -> Bool #
type Rep SAM_V1_6_Alignment_OptionalFields Source #
Instance details Defined in Data.SAM.Version1_6.Alignment.OptionalFields.Base type Rep SAM_V1_6_Alignment_OptionalFields = D1 ('MetaData "SAM_V1_6_Alignment_OptionalFields" "Data.SAM.Version1_6.Alignment.OptionalFields.Base" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Alignment_OptionalFields" 'PrefixI 'True) ((S1 ('MetaSel ('Just "sam_v1_6_alignment_optionalfields_aopt") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe SAM_V1_6_Alignment_OptionalFields_AOPT)) :: (S1 ('MetaSel ('Just "sam_v1_6_alignment_optionalfields_iopt") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe SAM_V1_6_Alignment_OptionalFields_IOPT)) :: S1 ('MetaSel ('Just "sam_v1_6_alignment_optionalfields_fopt") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe SAM_V1_6_Alignment_OptionalFields_FOPT)))) :: (S1 ('MetaSel ('Just "sam_v1_6_alignment_optionalfields_zopt") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe SAM_V1_6_Alignment_OptionalFields_ZOPT)) :: (S1 ('MetaSel ('Just "sam_v1_6_alignment_optionalfields_hopt") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe SAM_V1_6_Alignment_OptionalFields_HOPT)) :*: S1 ('MetaSel ('Just "sam_v1_6_alignment_optionalfields_bopt") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe SAM_V1_6_Alignment_OptionalFields_BOPT))))))