hs-samtools-0.10.0.3: Read and write SAM, BAM, and CRAM files.
Contents
Index
A
B
E
F
H
P
R
S
W
Z
All
Index - P
parse_BAM_V1_6_BAM
Data.BAM.Version1_6.Read.Parser.BAM.Base
parse_BAM_V1_6_BAM_Alignment
Data.BAM.Version1_6.Read.Parser.BAM.Alignment.Base
parse_BAM_V1_6_BAM_Alignment_OptionalFields_AOPT
Data.BAM.Version1_6.Read.Parser.BAM.Alignment.OptionalFields.AOPT
parse_BAM_V1_6_BAM_Alignment_OptionalFields_BigCOPT
Data.BAM.Version1_6.Read.Parser.BAM.Alignment.OptionalFields.BigCOPT
parse_BAM_V1_6_BAM_Alignment_OptionalFields_BigIOPT
Data.BAM.Version1_6.Read.Parser.BAM.Alignment.OptionalFields.BigIOPT
parse_BAM_V1_6_BAM_Alignment_OptionalFields_BigSOPT
Data.BAM.Version1_6.Read.Parser.BAM.Alignment.OptionalFields.BigSOPT
parse_BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
Data.BAM.Version1_6.Read.Parser.BAM.Alignment.OptionalFields.BOPT
parse_BAM_V1_6_BAM_Alignment_OptionalFields_FOPT
Data.BAM.Version1_6.Read.Parser.BAM.Alignment.OptionalFields.FOPT
parse_BAM_V1_6_BAM_Alignment_OptionalFields_HOPT
Data.BAM.Version1_6.Read.Parser.BAM.Alignment.OptionalFields.HOPT
parse_BAM_V1_6_BAM_Alignment_OptionalFields_SmallCOPT
Data.BAM.Version1_6.Read.Parser.BAM.Alignment.OptionalFields.SmallCOPT
parse_BAM_V1_6_BAM_Alignment_OptionalFields_SmallIOPT
Data.BAM.Version1_6.Read.Parser.BAM.Alignment.OptionalFields.SmallIOPT
parse_BAM_V1_6_BAM_Alignment_OptionalFields_SmallSOPT
Data.BAM.Version1_6.Read.Parser.BAM.Alignment.OptionalFields.SmallSOPT
parse_BAM_V1_6_BAM_Alignment_OptionalFields_ZOPT
Data.BAM.Version1_6.Read.Parser.BAM.Alignment.OptionalFields.ZOPT
parse_BAM_V1_6_BAM_BAMAlignments
Data.BAM.Version1_6.Read.Parser.BAM.BAMAlignments
parse_BAM_V1_6_BAM_BAMHeader
Data.BAM.Version1_6.Read.Parser.BAM.BAMHeader
parse_BAM_V1_6_BAM_Reference_Information
Data.BAM.Version1_6.Read.Parser.BAM.ReferenceInformation.Base
parse_BAM_V1_6_BGZFBlock
Data.BAM.Version1_6.Read.Parser.BGZFBlock
parse_SAM_V1_6_Alignment
Data.SAM.Version1_6.Read.Parser.Alignment.Base
parse_SAM_V1_6_Alignment_OptionalFields_AOPT
Data.SAM.Version1_6.Read.Parser.Alignment.OptionalFields.AOPT
parse_SAM_V1_6_Alignment_OptionalFields_BOPT
Data.SAM.Version1_6.Read.Parser.Alignment.OptionalFields.BOPT
parse_SAM_V1_6_Alignment_OptionalFields_FOPT
Data.SAM.Version1_6.Read.Parser.Alignment.OptionalFields.FOPT
parse_SAM_V1_6_Alignment_OptionalFields_HOPT
Data.SAM.Version1_6.Read.Parser.Alignment.OptionalFields.HOPT
parse_SAM_V1_6_Alignment_OptionalFields_IOPT
Data.SAM.Version1_6.Read.Parser.Alignment.OptionalFields.IOPT
parse_SAM_V1_6_Alignment_OptionalFields_ZOPT
Data.SAM.Version1_6.Read.Parser.Alignment.OptionalFields.ZOPT
parse_SAM_V1_6_File_Level_Metadata
Data.SAM.Version1_6.Read.Parser.Header.HD.Base
parse_SAM_V1_6_File_Level_Metadata_GO
Data.SAM.Version1_6.Read.Parser.Header.HD.GO
parse_SAM_V1_6_File_Level_Metadata_SO
Data.SAM.Version1_6.Read.Parser.Header.HD.SO
parse_SAM_V1_6_File_Level_Metadata_SS
Data.SAM.Version1_6.Read.Parser.Header.HD.SS
parse_SAM_V1_6_File_Level_Metadata_VN
Data.SAM.Version1_6.Read.Parser.Header.HD.VN
parse_SAM_V1_6_One_Line_Comment
Data.SAM.Version1_6.Read.Parser.Header.CO.Base
parse_SAM_V1_6_Program
Data.SAM.Version1_6.Read.Parser.Header.PG.Base
parse_SAM_V1_6_Program_CL
Data.SAM.Version1_6.Read.Parser.Header.PG.CL
parse_SAM_V1_6_Program_DS
Data.SAM.Version1_6.Read.Parser.Header.PG.DS
parse_SAM_V1_6_Program_ID
Data.SAM.Version1_6.Read.Parser.Header.PG.ID
parse_SAM_V1_6_Program_PN
Data.SAM.Version1_6.Read.Parser.Header.PG.PN
parse_SAM_V1_6_Program_PP
Data.SAM.Version1_6.Read.Parser.Header.PG.PP
parse_SAM_V1_6_Program_VN
Data.SAM.Version1_6.Read.Parser.Header.PG.VN
parse_SAM_V1_6_Read_Group
Data.SAM.Version1_6.Read.Parser.Header.RG.Base
parse_SAM_V1_6_Read_Group_BC
Data.SAM.Version1_6.Read.Parser.Header.RG.BC
parse_SAM_V1_6_Read_Group_CN
Data.SAM.Version1_6.Read.Parser.Header.RG.CN
parse_SAM_V1_6_Read_Group_DS
Data.SAM.Version1_6.Read.Parser.Header.RG.DS
parse_SAM_V1_6_Read_Group_DT
Data.SAM.Version1_6.Read.Parser.Header.RG.DT
parse_SAM_V1_6_Read_Group_FO
Data.SAM.Version1_6.Read.Parser.Header.RG.FO
parse_SAM_V1_6_Read_Group_ID
Data.SAM.Version1_6.Read.Parser.Header.RG.ID
parse_SAM_V1_6_Read_Group_KS
Data.SAM.Version1_6.Read.Parser.Header.RG.KS
parse_SAM_V1_6_Read_Group_LB
Data.SAM.Version1_6.Read.Parser.Header.RG.LB
parse_SAM_V1_6_Read_Group_PG
Data.SAM.Version1_6.Read.Parser.Header.RG.PG
parse_SAM_V1_6_Read_Group_PI
Data.SAM.Version1_6.Read.Parser.Header.RG.PI
parse_SAM_V1_6_Read_Group_PL
Data.SAM.Version1_6.Read.Parser.Header.RG.PL
parse_SAM_V1_6_Read_Group_PM
Data.SAM.Version1_6.Read.Parser.Header.RG.PM
parse_SAM_V1_6_Read_Group_PU
Data.SAM.Version1_6.Read.Parser.Header.RG.PU
parse_SAM_V1_6_Read_Group_SM
Data.SAM.Version1_6.Read.Parser.Header.RG.SM
parse_SAM_V1_6_Reference_Sequence_Dictionary
Data.SAM.Version1_6.Read.Parser.Header.SQ.Base
parse_SAM_V1_6_Reference_Sequence_Dictionary_AH
Data.SAM.Version1_6.Read.Parser.Header.SQ.AH
parse_SAM_V1_6_Reference_Sequence_Dictionary_AN
Data.SAM.Version1_6.Read.Parser.Header.SQ.AN
parse_SAM_V1_6_Reference_Sequence_Dictionary_AS
Data.SAM.Version1_6.Read.Parser.Header.SQ.AS
parse_SAM_V1_6_Reference_Sequence_Dictionary_DS
Data.SAM.Version1_6.Read.Parser.Header.SQ.DS
parse_SAM_V1_6_Reference_Sequence_Dictionary_LN
Data.SAM.Version1_6.Read.Parser.Header.SQ.LN
parse_SAM_V1_6_Reference_Sequence_Dictionary_M5
Data.SAM.Version1_6.Read.Parser.Header.SQ.M5
parse_SAM_V1_6_Reference_Sequence_Dictionary_SN
Data.SAM.Version1_6.Read.Parser.Header.SQ.SN
parse_SAM_V1_6_Reference_Sequence_Dictionary_SP
Data.SAM.Version1_6.Read.Parser.Header.SQ.SP
parse_SAM_V1_6_Reference_Sequence_Dictionary_TP
Data.SAM.Version1_6.Read.Parser.Header.SQ.TP
parse_SAM_V1_6_Reference_Sequence_Dictionary_UR
Data.SAM.Version1_6.Read.Parser.Header.SQ.UR