{-# LANGUAGE DeriveDataTypeable    #-}
{-# LANGUAGE DeriveGeneric         #-}
{-# LANGUAGE FlexibleContexts      #-}
{-# LANGUAGE FlexibleInstances     #-}
{-# LANGUAGE MultiParamTypeClasses #-}
{-# LANGUAGE OverloadedStrings     #-}
{-# LANGUAGE StrictData            #-}
{-# LANGUAGE TypeFamilies          #-}

-- |
-- Module      :  Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT
-- Copyright   :  (c) Matthew Mosior 2024
-- License     :  BSD-style
-- Maintainer  :  mattm.github@gmail.com
-- Portability :  portable
--
-- = WARNING
--
-- This module is considered __internal__.
--
-- The Package Versioning Policy __does not apply__.
--
-- The contents of this module may change __in any way whatsoever__
-- and __without any warning__ between minor versions of this package.
--
-- Authors importing this library are expected to track development
-- closely.
--
-- All credit goes to the author(s)/maintainer(s) of the
-- [containers](https://hackage.haskell.org/package/containers) library
-- for the above warning text.
--
-- = Description
--
-- This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

module Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT ( -- * SAM version 1.6 alignment optional fields data type
                                                               BAM_V1_6_BAM_Alignment_OptionalFields_BOPT(..),
                                                               BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8(..),
                                                               BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8(..),
                                                               BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16(..),
                                                               BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16(..),
                                                               BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32(..),
                                                               BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32(..),
                                                               BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float(..),
                                                               BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType(..)
                                                             ) where

import Data.ByteString hiding (count)
import Data.Data
import Data.Int
import Data.Sequence
import Data.Word
import Generics.Deriving.Base

-- | Custom BAM (version 1.6) @"BAM_V1_6_BAM_Alignment_OptionalFields_BOPT"@ data type.
--
-- See section 4.2 of the [SAM v1.6](http://samtools.github.io/hts-specs/SAMv1.pdf) specification documentation.
data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT = BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
  { BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
bam_v1_6_bam_alignment_optionalfields_bopt_int8   :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
bam_v1_6_bam_alignment_optionalfields_bopt_word8  :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
bam_v1_6_bam_alignment_optionalfields_bopt_int16  :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
bam_v1_6_bam_alignment_optionalfields_bopt_word16 :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
bam_v1_6_bam_alignment_optionalfields_bopt_int32  :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word32 :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
bam_v1_6_bam_alignment_optionalfields_bopt_float  :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
  } deriving ((forall x.
 BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT x)
-> (forall x.
    Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT x
    -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT)
-> Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT x
forall a.
(forall x. a -> Rep a x) -> (forall x. Rep a x -> a) -> Generic a
$cfrom :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT x
from :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT x
$cto :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
to :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
Generic,Typeable)

instance Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT where
  BAM_V1_6_BAM_Alignment_OptionalFields_BOPT Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
bam_v1_6_bam_alignment_optionalfields_bopt_int81
                                             Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
bam_v1_6_bam_alignment_optionalfields_bopt_word81
                                             Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
bam_v1_6_bam_alignment_optionalfields_bopt_int161
                                             Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
bam_v1_6_bam_alignment_optionalfields_bopt_word161
                                             Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
bam_v1_6_bam_alignment_optionalfields_bopt_int321
                                             Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word321
                                             Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
bam_v1_6_bam_alignment_optionalfields_bopt_float1 == :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT -> Bool
==
    BAM_V1_6_BAM_Alignment_OptionalFields_BOPT Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
bam_v1_6_bam_alignment_optionalfields_bopt_int82
                                               Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
bam_v1_6_bam_alignment_optionalfields_bopt_word82
                                               Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
bam_v1_6_bam_alignment_optionalfields_bopt_int162
                                               Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
bam_v1_6_bam_alignment_optionalfields_bopt_word162
                                               Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
bam_v1_6_bam_alignment_optionalfields_bopt_int322
                                               Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word322
                                               Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
bam_v1_6_bam_alignment_optionalfields_bopt_float2 =
      Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
bam_v1_6_bam_alignment_optionalfields_bopt_int81   Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> Bool
forall a. Eq a => a -> a -> Bool
== Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
bam_v1_6_bam_alignment_optionalfields_bopt_int82   Bool -> Bool -> Bool
&&
      Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
bam_v1_6_bam_alignment_optionalfields_bopt_word81  Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> Bool
forall a. Eq a => a -> a -> Bool
== Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
bam_v1_6_bam_alignment_optionalfields_bopt_word82  Bool -> Bool -> Bool
&&
      Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
bam_v1_6_bam_alignment_optionalfields_bopt_int161  Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> Bool
forall a. Eq a => a -> a -> Bool
== Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
bam_v1_6_bam_alignment_optionalfields_bopt_int162  Bool -> Bool -> Bool
&&
      Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
bam_v1_6_bam_alignment_optionalfields_bopt_word161 Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> Bool
forall a. Eq a => a -> a -> Bool
== Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
bam_v1_6_bam_alignment_optionalfields_bopt_word162 Bool -> Bool -> Bool
&&
      Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
bam_v1_6_bam_alignment_optionalfields_bopt_int321  Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> Bool
forall a. Eq a => a -> a -> Bool
== Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
bam_v1_6_bam_alignment_optionalfields_bopt_int322  Bool -> Bool -> Bool
&&
      Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word321 Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> Bool
forall a. Eq a => a -> a -> Bool
== Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word322 Bool -> Bool -> Bool
&&
      Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
bam_v1_6_bam_alignment_optionalfields_bopt_float1  Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
-> Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> Bool
forall a. Eq a => a -> a -> Bool
== Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
bam_v1_6_bam_alignment_optionalfields_bopt_float2

instance Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT where
  show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT -> String
show (BAM_V1_6_BAM_Alignment_OptionalFields_BOPT Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
int8
                                                   Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
word8
                                                   Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
int16
                                                   Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
word16
                                                   Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
int32
                                                   Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
word32
                                                   Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
float
       ) =
    String
"BAM_V1_6_BAM_Alignment_OptionalFields_BOPT { "           String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
"bam_v1_6_bam_alignment_optionalfields_bopt_int8 = "      String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> String
forall a. Show a => a -> String
show Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
int8)                                               String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_word8 = "  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> String
forall a. Show a => a -> String
show Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
word8)                                              String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_int16 = "  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> String
forall a. Show a => a -> String
show Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
int16)                                              String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_word16 = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> String
forall a. Show a => a -> String
show Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
word16)                                             String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_int32 = "  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> String
forall a. Show a => a -> String
show Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
int32)                                              String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_word32 = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> String
forall a. Show a => a -> String
show Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
word32)                                             String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_float = "  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> String
forall a. Show a => a -> String
show Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
float)                                              String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" }"

-- | __c__CsSiIf of the last optional field (type B).
--
-- See section 4.2 of the [SAM v1.6](http://samtools.github.io/hts-specs/SAMv1.pdf) specification documentation.
data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 = BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
  { BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int8_tag   :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int8_type  :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int8_count :: Word32
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> Seq Int8
bam_v1_6_bam_alignment_optionalfields_bopt_int8_value :: Seq Int8
  } deriving ((forall x.
 BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 x)
-> (forall x.
    Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 x
    -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8)
-> Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 x
forall a.
(forall x. a -> Rep a x) -> (forall x. Rep a x -> a) -> Generic a
$cfrom :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 x
from :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 x
$cto :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
to :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
Generic,Typeable)

instance Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 where
  BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int8_tag1
                                                  ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int8_type1
                                                  Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int8_count1
                                                  Seq Int8
bam_v1_6_bam_alignment_optionalfields_bopt_int8_value1 == :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> Bool
==
    BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int8_tag2
                                                    ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int8_type2
                                                    Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int8_count2
                                                    Seq Int8
bam_v1_6_bam_alignment_optionalfields_bopt_int8_value2 =
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int8_tag1 ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int8_tag2     Bool -> Bool -> Bool
&&
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int8_type1 ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int8_type2   Bool -> Bool -> Bool
&&
      Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int8_count1 Word32 -> Word32 -> Bool
forall a. Eq a => a -> a -> Bool
== Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int8_count2 Bool -> Bool -> Bool
&&
      Seq Int8
bam_v1_6_bam_alignment_optionalfields_bopt_int8_value1 Seq Int8 -> Seq Int8 -> Bool
forall a. Eq a => a -> a -> Bool
== Seq Int8
bam_v1_6_bam_alignment_optionalfields_bopt_int8_value2

instance Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 where
  show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> String
show (BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 ByteString
tag
                                                        ByteString
bopttype
                                                        Word32
count
                                                        Seq Int8
value
       ) =
    String
"BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 { "          String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
"bam_v1_6_bam_alignment_optionalfields_bopt_int8_tag  = "     String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
tag)                                                    String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_int8_type = "  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
bopttype)                                               String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_int8_count = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Word32 -> String
forall a. Show a => a -> String
show Word32
count)                                                  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_int8_value = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Seq Int8 -> String
forall a. Show a => a -> String
show Seq Int8
value)                                                  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" }"

-- | c__C__sSiIf of the last optional field (type B).
--
-- See section 4.2 of the [SAM v1.6](http://samtools.github.io/hts-specs/SAMv1.pdf) specification documentation.
data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 = BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
  { BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word8_tag   :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word8_type  :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word8_count :: Word32
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> Seq Word8
bam_v1_6_bam_alignment_optionalfields_bopt_word8_value :: Seq Word8
  } deriving ((forall x.
 BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 x)
-> (forall x.
    Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 x
    -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8)
-> Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 x
forall a.
(forall x. a -> Rep a x) -> (forall x. Rep a x -> a) -> Generic a
$cfrom :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 x
from :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 x
$cto :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
to :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
Generic,Typeable)

instance Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 where
  BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word8_tag1
                                                   ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word8_type1
                                                   Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word8_count1
                                                   Seq Word8
bam_v1_6_bam_alignment_optionalfields_bopt_word8_value1 == :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> Bool
==
    BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word8_tag2
                                                     ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word8_type2
                                                     Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word8_count2
                                                     Seq Word8
bam_v1_6_bam_alignment_optionalfields_bopt_word8_value2 =
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word8_tag1 ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word8_tag2     Bool -> Bool -> Bool
&&
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word8_type1 ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word8_type2   Bool -> Bool -> Bool
&&
      Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word8_count1 Word32 -> Word32 -> Bool
forall a. Eq a => a -> a -> Bool
== Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word8_count2 Bool -> Bool -> Bool
&&
      Seq Word8
bam_v1_6_bam_alignment_optionalfields_bopt_word8_value1 Seq Word8 -> Seq Word8 -> Bool
forall a. Eq a => a -> a -> Bool
== Seq Word8
bam_v1_6_bam_alignment_optionalfields_bopt_word8_value2

instance Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 where
  show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> String
show (BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 ByteString
tag
                                                         ByteString
bopttype
                                                         Word32
count
                                                         Seq Word8
value
       ) =
    String
"BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 { "          String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
"bam_v1_6_bam_alignment_optionalfields_bopt_word8_tag  = "     String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
tag)                                                     String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_word8_type = "  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
bopttype)                                                String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_word8_count = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Word32 -> String
forall a. Show a => a -> String
show Word32
count)                                                   String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_word8_value = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Seq Word8 -> String
forall a. Show a => a -> String
show Seq Word8
value)                                                   String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" }"

-- | cC__s__SiIf of the last optional field (type B).
--
-- See section 4.2 of the [SAM v1.6](http://samtools.github.io/hts-specs/SAMv1.pdf) specification documentation.
data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 = BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
  { BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int16_tag   :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int16_type  :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int16_count :: Word32
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> Seq Int16
bam_v1_6_bam_alignment_optionalfields_bopt_int16_value :: Seq Int16
  } deriving ((forall x.
 BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 x)
-> (forall x.
    Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 x
    -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16)
-> Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 x
forall a.
(forall x. a -> Rep a x) -> (forall x. Rep a x -> a) -> Generic a
$cfrom :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 x
from :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 x
$cto :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
to :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
Generic,Typeable)

instance Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 where
  BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int16_tag1
                                                   ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int16_type1
                                                   Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int16_count1
                                                   Seq Int16
bam_v1_6_bam_alignment_optionalfields_bopt_int16_value1 == :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> Bool
==
    BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int16_tag2
                                                     ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int16_type2
                                                     Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int16_count2
                                                     Seq Int16
bam_v1_6_bam_alignment_optionalfields_bopt_int16_value2 =
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int16_tag1 ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int16_tag2     Bool -> Bool -> Bool
&&
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int16_type1 ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int16_type2   Bool -> Bool -> Bool
&&
      Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int16_count1 Word32 -> Word32 -> Bool
forall a. Eq a => a -> a -> Bool
== Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int16_count2 Bool -> Bool -> Bool
&&
      Seq Int16
bam_v1_6_bam_alignment_optionalfields_bopt_int16_value1 Seq Int16 -> Seq Int16 -> Bool
forall a. Eq a => a -> a -> Bool
== Seq Int16
bam_v1_6_bam_alignment_optionalfields_bopt_int16_value2

instance Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 where
  show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> String
show (BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 ByteString
tag
                                                         ByteString
bopttype
                                                         Word32
count
                                                         Seq Int16
value
       ) =
    String
"BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 { "          String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
"bam_v1_6_bam_alignment_optionalfields_bopt_int16_tag  = "     String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
tag)                                                     String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_int16_type = "  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
bopttype)                                                String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_int16_count = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Word32 -> String
forall a. Show a => a -> String
show Word32
count)                                                   String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_int16_value = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Seq Int16 -> String
forall a. Show a => a -> String
show Seq Int16
value)                                                   String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" }"

-- | cCs__S__iIf of the last optional field (type B).
--
-- See section 4.2 of the [SAM v1.6](http://samtools.github.io/hts-specs/SAMv1.pdf) specification documentation.
data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 = BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
  { BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word16_tag   :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word16_type  :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word16_count :: Word32
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> Seq Word16
bam_v1_6_bam_alignment_optionalfields_bopt_word16_value :: Seq Word16
  } deriving ((forall x.
 BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 x)
-> (forall x.
    Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 x
    -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16)
-> Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 x
forall a.
(forall x. a -> Rep a x) -> (forall x. Rep a x -> a) -> Generic a
$cfrom :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 x
from :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 x
$cto :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
to :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
Generic,Typeable)

instance Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 where
  BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word16_tag1
                                                    ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word16_type1
                                                    Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word16_count1
                                                    Seq Word16
bam_v1_6_bam_alignment_optionalfields_bopt_word16_value1 == :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> Bool
==
    BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word16_tag2
                                                      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word16_type2
                                                      Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word16_count2
                                                      Seq Word16
bam_v1_6_bam_alignment_optionalfields_bopt_word16_value2 =
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word16_tag1 ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word16_tag2     Bool -> Bool -> Bool
&&
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word16_type1 ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word16_type2   Bool -> Bool -> Bool
&&
      Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word16_count1 Word32 -> Word32 -> Bool
forall a. Eq a => a -> a -> Bool
== Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word16_count2 Bool -> Bool -> Bool
&&
      Seq Word16
bam_v1_6_bam_alignment_optionalfields_bopt_word16_value1 Seq Word16 -> Seq Word16 -> Bool
forall a. Eq a => a -> a -> Bool
== Seq Word16
bam_v1_6_bam_alignment_optionalfields_bopt_word16_value2

instance Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 where
  show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> String
show (BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 ByteString
tag
                                                          ByteString
bopttype
                                                          Word32
count
                                                          Seq Word16
value
       ) =
    String
"BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 { "          String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
"bam_v1_6_bam_alignment_optionalfields_bopt_word16_tag  = "     String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
tag)                                                      String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_word16_type = "  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
bopttype)                                                 String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_word16_count = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Word32 -> String
forall a. Show a => a -> String
show Word32
count)                                                    String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_word16_value = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Seq Word16 -> String
forall a. Show a => a -> String
show Seq Word16
value)                                                    String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" }"

-- | cCsS__i__If of the last optional field (type B).
--
-- See section 4.2 of the [SAM v1.6](http://samtools.github.io/hts-specs/SAMv1.pdf) specification documentation.
data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 = BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
  { BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int32_tag   :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int32_type  :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int32_count :: Word32
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> Seq Int32
bam_v1_6_bam_alignment_optionalfields_bopt_int32_value :: Seq Int32
  } deriving ((forall x.
 BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 x)
-> (forall x.
    Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 x
    -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32)
-> Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 x
forall a.
(forall x. a -> Rep a x) -> (forall x. Rep a x -> a) -> Generic a
$cfrom :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 x
from :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 x
$cto :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
to :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
Generic,Typeable)

instance Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 where
  BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int32_tag1
                                                   ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int32_type1
                                                   Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int32_count1
                                                   Seq Int32
bam_v1_6_bam_alignment_optionalfields_bopt_int32_value1 == :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> Bool
==
    BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int32_tag2
                                                     ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int32_type2
                                                     Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int32_count2
                                                     Seq Int32
bam_v1_6_bam_alignment_optionalfields_bopt_int32_value2 =
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int32_tag1 ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int32_tag2     Bool -> Bool -> Bool
&&
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int32_type1 ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_int32_type2   Bool -> Bool -> Bool
&&
      Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int32_count1 Word32 -> Word32 -> Bool
forall a. Eq a => a -> a -> Bool
== Word32
bam_v1_6_bam_alignment_optionalfields_bopt_int32_count2 Bool -> Bool -> Bool
&&
      Seq Int32
bam_v1_6_bam_alignment_optionalfields_bopt_int32_value1 Seq Int32 -> Seq Int32 -> Bool
forall a. Eq a => a -> a -> Bool
== Seq Int32
bam_v1_6_bam_alignment_optionalfields_bopt_int32_value2

instance Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 where
  show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> String
show (BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 ByteString
tag
                                                         ByteString
bopttype
                                                         Word32
count
                                                         Seq Int32
value
       ) =
    String
"BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 { "          String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
"bam_v1_6_bam_alignment_optionalfields_bopt_int32_tag  = "     String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
tag)                                                     String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_int32_type = "  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
bopttype)                                                String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_int32_count = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Word32 -> String
forall a. Show a => a -> String
show Word32
count)                                                   String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_int32_value = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Seq Int32 -> String
forall a. Show a => a -> String
show Seq Int32
value)                                                   String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" }"

-- | cCsSi__I__f of the last optional field (type B).
--
-- See section 4.2 of the [SAM v1.6](http://samtools.github.io/hts-specs/SAMv1.pdf) specification documentation.
data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 = BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
  { BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word32_tag   :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word32_type  :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word32_count :: Word32
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> Seq Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word32_value :: Seq Word32
  } deriving ((forall x.
 BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 x)
-> (forall x.
    Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 x
    -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32)
-> Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 x
forall a.
(forall x. a -> Rep a x) -> (forall x. Rep a x -> a) -> Generic a
$cfrom :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 x
from :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 x
$cto :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
to :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
Generic,Typeable)

instance Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 where
  BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word32_tag1
                                                    ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word32_type1
                                                    Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word32_count1
                                                    Seq Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word32_value1 == :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> Bool
==
    BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word32_tag2
                                                      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word32_type2
                                                      Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word32_count2
                                                      Seq Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word32_value2 =
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word32_tag1 ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word32_tag2     Bool -> Bool -> Bool
&&
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word32_type1 ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_word32_type2   Bool -> Bool -> Bool
&&
      Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word32_count1 Word32 -> Word32 -> Bool
forall a. Eq a => a -> a -> Bool
== Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word32_count2 Bool -> Bool -> Bool
&&
      Seq Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word32_value1 Seq Word32 -> Seq Word32 -> Bool
forall a. Eq a => a -> a -> Bool
== Seq Word32
bam_v1_6_bam_alignment_optionalfields_bopt_word32_value2

instance Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 where
  show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> String
show (BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 ByteString
tag
                                                          ByteString
bopttype
                                                          Word32
count
                                                          Seq Word32
value
       ) =
    String
"BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 { "          String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
"bam_v1_6_bam_alignment_optionalfields_bopt_word32_tag  = "     String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
tag)                                                      String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_word32_type = "  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
bopttype)                                                 String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_word32_count = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Word32 -> String
forall a. Show a => a -> String
show Word32
count)                                                    String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_word32_value = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Seq Word32 -> String
forall a. Show a => a -> String
show Seq Word32
value)                                                    String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" }"

-- | cCsSiI__f__ of the last optional field (type B).
--
-- See section 4.2 of the [SAM v1.6](http://samtools.github.io/hts-specs/SAMv1.pdf) specification documentation.
data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float = BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
  { BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_float_tag   :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_float_type  :: ByteString
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> Word32
bam_v1_6_bam_alignment_optionalfields_bopt_float_count :: Word32
  , BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> Seq Float
bam_v1_6_bam_alignment_optionalfields_bopt_float_value :: Seq Float
  } deriving ((forall x.
 BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float x)
-> (forall x.
    Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float x
    -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float)
-> Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float x
forall a.
(forall x. a -> Rep a x) -> (forall x. Rep a x -> a) -> Generic a
$cfrom :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float x
from :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float x
$cto :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
to :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
Generic,Typeable)

instance Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float where
  BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_float_tag1
                                                   ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_float_type1
                                                   Word32
bam_v1_6_bam_alignment_optionalfields_bopt_float_count1
                                                   Seq Float
bam_v1_6_bam_alignment_optionalfields_bopt_float_value1 == :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> Bool
==
    BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_float_tag2
                                                     ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_float_type2
                                                     Word32
bam_v1_6_bam_alignment_optionalfields_bopt_float_count2
                                                     Seq Float
bam_v1_6_bam_alignment_optionalfields_bopt_float_value2 =
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_float_tag1   ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_float_tag2   Bool -> Bool -> Bool
&&
      ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_float_type1  ByteString -> ByteString -> Bool
forall a. Eq a => a -> a -> Bool
== ByteString
bam_v1_6_bam_alignment_optionalfields_bopt_float_type2  Bool -> Bool -> Bool
&&
      Word32
bam_v1_6_bam_alignment_optionalfields_bopt_float_count1 Word32 -> Word32 -> Bool
forall a. Eq a => a -> a -> Bool
== Word32
bam_v1_6_bam_alignment_optionalfields_bopt_float_count2 Bool -> Bool -> Bool
&&
      Seq Float
bam_v1_6_bam_alignment_optionalfields_bopt_float_value1 Seq Float -> Seq Float -> Bool
forall a. Eq a => a -> a -> Bool
== Seq Float
bam_v1_6_bam_alignment_optionalfields_bopt_float_value2

instance Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float where
  show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> String
show (BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float ByteString
tag
                                                         ByteString
bopttype
                                                         Word32
count
                                                         Seq Float
value
       ) =
    String
"BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float { "          String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
"bam_v1_6_bam_alignment_optionalfields_bopt_float_tag  = "     String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
tag)                                                     String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_float_type = "  String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (ByteString -> String
forall a. Show a => a -> String
show ByteString
bopttype)                                                String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_float_count = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Word32 -> String
forall a. Show a => a -> String
show Word32
count)                                                   String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" , bam_v1_6_bam_alignment_optionalfields_bopt_float_value = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Seq Float -> String
forall a. Show a => a -> String
show Seq Float
value)                                                   String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" }"

-- | Sum type that can represent any of the
-- BAM_V1_6_BAM_Alignment_OptionalFields_BOPT types.
data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType =
    BOPTInt8
  | BOPTWord8
  | BOPTInt16
  | BOPTWord16
  | BOPTInt32
  | BOPTWord32
  | BOPTFloat
  | BOPTEmpty
  deriving (BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType -> Bool
(BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType -> Bool)
-> (BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
    -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType -> Bool)
-> Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
forall a. (a -> a -> Bool) -> (a -> a -> Bool) -> Eq a
$c== :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType -> Bool
== :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType -> Bool
$c/= :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType -> Bool
/= :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType -> Bool
Eq,(forall x.
 BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType x)
-> (forall x.
    Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType x
    -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType)
-> Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType x
forall a.
(forall x. a -> Rep a x) -> (forall x. Rep a x -> a) -> Generic a
$cfrom :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType x
from :: forall x.
BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
-> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType x
$cto :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
to :: forall x.
Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType x
-> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType
Generic,Typeable)