{-# LANGUAGE DeriveDataTypeable    #-}
{-# LANGUAGE DeriveGeneric         #-}
{-# LANGUAGE FlexibleContexts      #-}
{-# LANGUAGE FlexibleInstances     #-}
{-# LANGUAGE MultiParamTypeClasses #-}
{-# LANGUAGE OverloadedStrings     #-}
{-# LANGUAGE StrictData            #-}
{-# LANGUAGE TypeFamilies          #-}

-- |
-- Module      :  Data.BAM.Version1_6.BAM.BAMAlignments
-- Copyright   :  (c) Matthew Mosior 2024
-- License     :  BSD-style
-- Maintainer  :  mattm.github@gmail.com
-- Portability :  portable
--
-- = Description
--
-- This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

module Data.BAM.Version1_6.BAM.BAMAlignments ( -- * BAM_V1_6_BAM_BAMAlignment version 1.6 data type
                                               BAM_V1_6_BAM_BAMAlignments(..)
                                             ) where

import Data.BAM.Version1_6.BAM.Alignment

import Data.Data
import Data.Sequence
import Generics.Deriving.Base

-- | Custom @"BAM_V1_6_BAM_BAMAlignments"@ (BAM version 1.6) data type.
--
-- See the [SAM v1.6](http://samtools.github.io/hts-specs/SAMv1.pdf) specification documentation.
newtype BAM_V1_6_BAM_BAMAlignments = BAM_V1_6_BAM_BAMAlignments
  { BAM_V1_6_BAM_BAMAlignments -> Seq BAM_V1_6_BAM_Alignment
bam_v1_6_bam_bamalignments_alignments :: Seq BAM_V1_6_BAM_Alignment -- ^ List of alignments.
  } deriving ((forall x.
 BAM_V1_6_BAM_BAMAlignments -> Rep BAM_V1_6_BAM_BAMAlignments x)
-> (forall x.
    Rep BAM_V1_6_BAM_BAMAlignments x -> BAM_V1_6_BAM_BAMAlignments)
-> Generic BAM_V1_6_BAM_BAMAlignments
forall x.
Rep BAM_V1_6_BAM_BAMAlignments x -> BAM_V1_6_BAM_BAMAlignments
forall x.
BAM_V1_6_BAM_BAMAlignments -> Rep BAM_V1_6_BAM_BAMAlignments x
forall a.
(forall x. a -> Rep a x) -> (forall x. Rep a x -> a) -> Generic a
$cfrom :: forall x.
BAM_V1_6_BAM_BAMAlignments -> Rep BAM_V1_6_BAM_BAMAlignments x
from :: forall x.
BAM_V1_6_BAM_BAMAlignments -> Rep BAM_V1_6_BAM_BAMAlignments x
$cto :: forall x.
Rep BAM_V1_6_BAM_BAMAlignments x -> BAM_V1_6_BAM_BAMAlignments
to :: forall x.
Rep BAM_V1_6_BAM_BAMAlignments x -> BAM_V1_6_BAM_BAMAlignments
Generic,Typeable)

instance Eq BAM_V1_6_BAM_BAMAlignments where
  BAM_V1_6_BAM_BAMAlignments Seq BAM_V1_6_BAM_Alignment
bam_v1_6_bamalignments_alignments1 == :: BAM_V1_6_BAM_BAMAlignments -> BAM_V1_6_BAM_BAMAlignments -> Bool
==
    BAM_V1_6_BAM_BAMAlignments Seq BAM_V1_6_BAM_Alignment
bam_v1_6_bamalignments_alignments2 =
      Seq BAM_V1_6_BAM_Alignment
bam_v1_6_bamalignments_alignments1 Seq BAM_V1_6_BAM_Alignment -> Seq BAM_V1_6_BAM_Alignment -> Bool
forall a. Eq a => a -> a -> Bool
== Seq BAM_V1_6_BAM_Alignment
bam_v1_6_bamalignments_alignments2 

instance Show BAM_V1_6_BAM_BAMAlignments where
  show :: BAM_V1_6_BAM_BAMAlignments -> String
show (BAM_V1_6_BAM_BAMAlignments Seq BAM_V1_6_BAM_Alignment
alignments
       ) =
    String
"BAM_V1_6_BAM_BAMAlignments { "        String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
"bam_v1_6_bamalignments_alignments = " String -> ShowS
forall a. [a] -> [a] -> [a]
++
    (Seq BAM_V1_6_BAM_Alignment -> String
forall a. Show a => a -> String
show Seq BAM_V1_6_BAM_Alignment
alignments)                      String -> ShowS
forall a. [a] -> [a] -> [a]
++
    String
" }"