Data.SAM.Version1_6.Header.RG

WARNING

This module is considered internal.

The Package Versioning Policy does not apply.

The contents of this module may change in any way whatsoever and without any warning between minor versions of this package.

Authors importing this library are expected to track development closely.

All credit goes to the author(s)/maintainer(s) of the containers library for the above warning text.

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

SAM version 1.6 Read group data type

data SAM_V1_6_Read_Group

Custom SAM (version 1.6) SAM_V1_6_Read_Group data type. See section 1.3 of the SAM v1.6 specification documentation.

Constructors

SAM_V1_6_Read_Group

Fields

• sam_v1_6_read_group_identifer :: SAM_V1_6_Read_Group_Identifier
• sam_v1_6_read_group_barcode_sequence :: Maybe SAM_V1_6_Read_Group_Barcode_Sequence
• sam_v1_6_read_group_sequencing_center :: Maybe SAM_V1_6_Read_Group_Sequencing_Center
• sam_v1_6_read_group_description :: Maybe SAM_V1_6_Read_Group_Description
• sam_v1_6_read_group_run_date :: Maybe SAM_V1_6_Read_Group_Run_Date
• sam_v1_6_read_group_flow_order :: Maybe SAM_V1_6_Read_Group_Flow_Order
• sam_v1_6_read_group_key_sequence :: Maybe SAM_V1_6_Read_Group_Key_Sequence
• sam_v1_6_read_group_library :: Maybe SAM_V1_6_Read_Group_Library
• sam_v1_6_read_group_programs :: Maybe SAM_V1_6_Read_Group_Programs
• sam_v1_6_read_group_predicted_median_insert_size :: Maybe SAM_V1_6_Read_Group_Predicted_Median_Insert_Size
• sam_v1_6_read_group_platform :: Maybe SAM_V1_6_Read_Group_Platform
• sam_v1_6_read_group_platform_model :: Maybe SAM_V1_6_Read_Group_Platform_Model
• sam_v1_6_read_group_platform_unit :: Maybe SAM_V1_6_Read_Group_Platform_Unit
• sam_v1_6_read_group_sample :: Maybe SAM_V1_6_Read_Group_Sample

SAM version 1.6 Read group data types

data SAM_V1_6_Read_Group_Identifier

ID tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Identifier

Fields

• sam_v1_6_read_group_identifer_tag :: Seq Word8
• sam_v1_6_read_group_identifer_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Identifier

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Identifier :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Identifier -> Rep SAM_V1_6_Read_Group_Identifier x

to :: Rep SAM_V1_6_Read_Group_Identifier x -> SAM_V1_6_Read_Group_Identifier

Show SAM_V1_6_Read_Group_Identifier

Show instance for SAM_V1_6_Read_Group_Identifier.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Identifier -> ShowS

show :: SAM_V1_6_Read_Group_Identifier -> String

showList :: [SAM_V1_6_Read_Group_Identifier] -> ShowS

Eq SAM_V1_6_Read_Group_Identifier

Eq instance for SAM_V1_6_Read_Group_Identifier.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Identifier -> SAM_V1_6_Read_Group_Identifier -> Bool

(/=) :: SAM_V1_6_Read_Group_Identifier -> SAM_V1_6_Read_Group_Identifier -> Bool

type Rep SAM_V1_6_Read_Group_Identifier

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Identifier = D1 ('MetaData "SAM_V1_6_Read_Group_Identifier" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Identifier" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_identifer_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_identifer_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Barcode_Sequence

BC tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Barcode_Sequence

Fields

• sam_v1_6_read_group_barcode_sequence_tag :: Seq Word8
• sam_v1_6_read_group_barcode_sequence_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Barcode_Sequence

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Barcode_Sequence :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Barcode_Sequence -> Rep SAM_V1_6_Read_Group_Barcode_Sequence x

to :: Rep SAM_V1_6_Read_Group_Barcode_Sequence x -> SAM_V1_6_Read_Group_Barcode_Sequence

Show SAM_V1_6_Read_Group_Barcode_Sequence

Show instance for SAM_V1_6_Read_Group_Barcode_Sequence.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Barcode_Sequence -> ShowS

show :: SAM_V1_6_Read_Group_Barcode_Sequence -> String

showList :: [SAM_V1_6_Read_Group_Barcode_Sequence] -> ShowS

Eq SAM_V1_6_Read_Group_Barcode_Sequence

Eq instance for SAM_V1_6_Read_Group_Barcode_Sequence.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Barcode_Sequence -> SAM_V1_6_Read_Group_Barcode_Sequence -> Bool

(/=) :: SAM_V1_6_Read_Group_Barcode_Sequence -> SAM_V1_6_Read_Group_Barcode_Sequence -> Bool

type Rep SAM_V1_6_Read_Group_Barcode_Sequence

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Barcode_Sequence = D1 ('MetaData "SAM_V1_6_Read_Group_Barcode_Sequence" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Barcode_Sequence" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_barcode_sequence_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_barcode_sequence_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Sequencing_Center

CN tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Sequencing_Center

Fields

• sam_v1_6_read_group_sequencing_center_tag :: Seq Word8
• sam_v1_6_read_group_sequencing_center_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Sequencing_Center

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Sequencing_Center :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Sequencing_Center -> Rep SAM_V1_6_Read_Group_Sequencing_Center x

to :: Rep SAM_V1_6_Read_Group_Sequencing_Center x -> SAM_V1_6_Read_Group_Sequencing_Center

Show SAM_V1_6_Read_Group_Sequencing_Center

Show instance for SAM_V1_6_Read_Group_Sequencing_Center.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Sequencing_Center -> ShowS

show :: SAM_V1_6_Read_Group_Sequencing_Center -> String

showList :: [SAM_V1_6_Read_Group_Sequencing_Center] -> ShowS

Eq SAM_V1_6_Read_Group_Sequencing_Center

Eq instance for SAM_V1_6_Read_Group_Sequencing_Center.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Sequencing_Center -> SAM_V1_6_Read_Group_Sequencing_Center -> Bool

(/=) :: SAM_V1_6_Read_Group_Sequencing_Center -> SAM_V1_6_Read_Group_Sequencing_Center -> Bool

type Rep SAM_V1_6_Read_Group_Sequencing_Center

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Sequencing_Center = D1 ('MetaData "SAM_V1_6_Read_Group_Sequencing_Center" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Sequencing_Center" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_sequencing_center_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_sequencing_center_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Description

DS tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Description

Fields

• sam_v1_6_read_group_description_tag :: Seq Word8
• sam_v1_6_read_group_description_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Description

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Description :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Description -> Rep SAM_V1_6_Read_Group_Description x

to :: Rep SAM_V1_6_Read_Group_Description x -> SAM_V1_6_Read_Group_Description

Show SAM_V1_6_Read_Group_Description

Show instance for SAM_V1_6_Read_Group_Description.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Description -> ShowS

show :: SAM_V1_6_Read_Group_Description -> String

showList :: [SAM_V1_6_Read_Group_Description] -> ShowS

Eq SAM_V1_6_Read_Group_Description

Eq instance for SAM_V1_6_Read_Group_Description.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Description -> SAM_V1_6_Read_Group_Description -> Bool

(/=) :: SAM_V1_6_Read_Group_Description -> SAM_V1_6_Read_Group_Description -> Bool

type Rep SAM_V1_6_Read_Group_Description

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Description = D1 ('MetaData "SAM_V1_6_Read_Group_Description" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Description" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_description_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_description_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Run_Date

DT tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Run_Date

Fields

• sam_v1_6_read_group_run_date_tag :: Seq Word8
• sam_v1_6_read_group_run_date_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Run_Date

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Run_Date :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Run_Date -> Rep SAM_V1_6_Read_Group_Run_Date x

to :: Rep SAM_V1_6_Read_Group_Run_Date x -> SAM_V1_6_Read_Group_Run_Date

Show SAM_V1_6_Read_Group_Run_Date

Show instance for SAM_V1_6_Read_Group_Run_Date.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Run_Date -> ShowS

show :: SAM_V1_6_Read_Group_Run_Date -> String

showList :: [SAM_V1_6_Read_Group_Run_Date] -> ShowS

Eq SAM_V1_6_Read_Group_Run_Date

Eq instance for SAM_V1_6_Read_Group_Run_Date.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Run_Date -> SAM_V1_6_Read_Group_Run_Date -> Bool

(/=) :: SAM_V1_6_Read_Group_Run_Date -> SAM_V1_6_Read_Group_Run_Date -> Bool

type Rep SAM_V1_6_Read_Group_Run_Date

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Run_Date = D1 ('MetaData "SAM_V1_6_Read_Group_Run_Date" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Run_Date" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_run_date_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_run_date_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Flow_Order

FO tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Flow_Order

Fields

• sam_v1_6_read_group_flow_order_tag :: Seq Word8
• sam_v1_6_read_group_flow_order_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Flow_Order

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Flow_Order :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Flow_Order -> Rep SAM_V1_6_Read_Group_Flow_Order x

to :: Rep SAM_V1_6_Read_Group_Flow_Order x -> SAM_V1_6_Read_Group_Flow_Order

Show SAM_V1_6_Read_Group_Flow_Order

Show instance for SAM_V1_6_Read_Group_Flow_Order.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Flow_Order -> ShowS

show :: SAM_V1_6_Read_Group_Flow_Order -> String

showList :: [SAM_V1_6_Read_Group_Flow_Order] -> ShowS

Eq SAM_V1_6_Read_Group_Flow_Order

Eq instance for SAM_V1_6_Read_Group_Flow_Order.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Flow_Order -> SAM_V1_6_Read_Group_Flow_Order -> Bool

(/=) :: SAM_V1_6_Read_Group_Flow_Order -> SAM_V1_6_Read_Group_Flow_Order -> Bool

type Rep SAM_V1_6_Read_Group_Flow_Order

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Flow_Order = D1 ('MetaData "SAM_V1_6_Read_Group_Flow_Order" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Flow_Order" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_flow_order_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_flow_order_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Key_Sequence

KS tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Key_Sequence

Fields

• sam_v1_6_read_group_key_sequence_tag :: Seq Word8
• sam_v1_6_read_group_key_sequence_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Key_Sequence

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Key_Sequence :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Key_Sequence -> Rep SAM_V1_6_Read_Group_Key_Sequence x

to :: Rep SAM_V1_6_Read_Group_Key_Sequence x -> SAM_V1_6_Read_Group_Key_Sequence

Show SAM_V1_6_Read_Group_Key_Sequence

Show instance for SAM_V1_6_Read_Group_Key_Sequence.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Key_Sequence -> ShowS

show :: SAM_V1_6_Read_Group_Key_Sequence -> String

showList :: [SAM_V1_6_Read_Group_Key_Sequence] -> ShowS

Eq SAM_V1_6_Read_Group_Key_Sequence

Eq instance for SAM_V1_6_Read_Group_Key_Sequence.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Key_Sequence -> SAM_V1_6_Read_Group_Key_Sequence -> Bool

(/=) :: SAM_V1_6_Read_Group_Key_Sequence -> SAM_V1_6_Read_Group_Key_Sequence -> Bool

type Rep SAM_V1_6_Read_Group_Key_Sequence

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Key_Sequence = D1 ('MetaData "SAM_V1_6_Read_Group_Key_Sequence" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Key_Sequence" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_key_sequence_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_key_sequence_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Library

LB tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Library

Fields

• sam_v1_6_read_group_library_tag :: Seq Word8
• sam_v1_6_read_group_library_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Library

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Library :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Library -> Rep SAM_V1_6_Read_Group_Library x

to :: Rep SAM_V1_6_Read_Group_Library x -> SAM_V1_6_Read_Group_Library

Show SAM_V1_6_Read_Group_Library

Show instance for SAM_V1_6_Read_Group_Library.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Library -> ShowS

show :: SAM_V1_6_Read_Group_Library -> String

showList :: [SAM_V1_6_Read_Group_Library] -> ShowS

Eq SAM_V1_6_Read_Group_Library

Eq instance for SAM_V1_6_Read_Group_Library.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Library -> SAM_V1_6_Read_Group_Library -> Bool

(/=) :: SAM_V1_6_Read_Group_Library -> SAM_V1_6_Read_Group_Library -> Bool

type Rep SAM_V1_6_Read_Group_Library

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Library = D1 ('MetaData "SAM_V1_6_Read_Group_Library" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Library" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_library_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_library_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Programs

PG tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Programs

Fields

• sam_v1_6_read_group_programs_tag :: Seq Word8
• sam_v1_6_read_group_programs_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Programs

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Programs :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Programs -> Rep SAM_V1_6_Read_Group_Programs x

to :: Rep SAM_V1_6_Read_Group_Programs x -> SAM_V1_6_Read_Group_Programs

Show SAM_V1_6_Read_Group_Programs

Show instance for SAM_V1_6_Read_Group_Programs.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Programs -> ShowS

show :: SAM_V1_6_Read_Group_Programs -> String

showList :: [SAM_V1_6_Read_Group_Programs] -> ShowS

Eq SAM_V1_6_Read_Group_Programs

Eq instance for SAM_V1_6_Read_Group_Programs.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Programs -> SAM_V1_6_Read_Group_Programs -> Bool

(/=) :: SAM_V1_6_Read_Group_Programs -> SAM_V1_6_Read_Group_Programs -> Bool

type Rep SAM_V1_6_Read_Group_Programs

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Programs = D1 ('MetaData "SAM_V1_6_Read_Group_Programs" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Programs" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_programs_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_programs_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

PI tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

Fields

• sam_v1_6_read_group_predicted_median_insert_size_tag :: Seq Word8
• sam_v1_6_read_group_predicted_median_insert_size_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size x

to :: Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size x -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

Show SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

Show instance for SAM_V1_6_Read_Group_Predicted_Median_Insert_Size.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> ShowS

show :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> String

showList :: [SAM_V1_6_Read_Group_Predicted_Median_Insert_Size] -> ShowS

Eq SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

Eq instance for SAM_V1_6_Read_Group_Predicted_Median_Insert_Size.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Bool

(/=) :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Bool

type Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size = D1 ('MetaData "SAM_V1_6_Read_Group_Predicted_Median_Insert_Size" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Predicted_Median_Insert_Size" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_predicted_median_insert_size_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_predicted_median_insert_size_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Platform

PL tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform

Fields

• sam_v1_6_read_group_platform_tag :: Seq Word8
• sam_v1_6_read_group_platform_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Platform

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Platform :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Platform -> Rep SAM_V1_6_Read_Group_Platform x

to :: Rep SAM_V1_6_Read_Group_Platform x -> SAM_V1_6_Read_Group_Platform

Show SAM_V1_6_Read_Group_Platform

Show instance for SAM_V1_6_Read_Group_Platform.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Platform -> ShowS

show :: SAM_V1_6_Read_Group_Platform -> String

showList :: [SAM_V1_6_Read_Group_Platform] -> ShowS

Eq SAM_V1_6_Read_Group_Platform

Eq instance for SAM_V1_6_Read_Group_Platform.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Platform -> SAM_V1_6_Read_Group_Platform -> Bool

(/=) :: SAM_V1_6_Read_Group_Platform -> SAM_V1_6_Read_Group_Platform -> Bool

type Rep SAM_V1_6_Read_Group_Platform

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Platform = D1 ('MetaData "SAM_V1_6_Read_Group_Platform" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Platform" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Platform_Model

PM tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform_Model

Fields

• sam_v1_6_read_group_platform_model_tag :: Seq Word8
• sam_v1_6_read_group_platform_model_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Platform_Model

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Platform_Model :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Platform_Model -> Rep SAM_V1_6_Read_Group_Platform_Model x

to :: Rep SAM_V1_6_Read_Group_Platform_Model x -> SAM_V1_6_Read_Group_Platform_Model

Show SAM_V1_6_Read_Group_Platform_Model

Show instance for SAM_V1_6_Read_Group_Platform_Model.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Platform_Model -> ShowS

show :: SAM_V1_6_Read_Group_Platform_Model -> String

showList :: [SAM_V1_6_Read_Group_Platform_Model] -> ShowS

Eq SAM_V1_6_Read_Group_Platform_Model

Eq instance for SAM_V1_6_Read_Group_Platform_Model.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Platform_Model -> SAM_V1_6_Read_Group_Platform_Model -> Bool

(/=) :: SAM_V1_6_Read_Group_Platform_Model -> SAM_V1_6_Read_Group_Platform_Model -> Bool

type Rep SAM_V1_6_Read_Group_Platform_Model

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Platform_Model = D1 ('MetaData "SAM_V1_6_Read_Group_Platform_Model" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Platform_Model" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_model_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_model_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Platform_Unit

PU tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform_Unit

Fields

• sam_v1_6_read_group_platform_unit_tag :: Seq Word8
• sam_v1_6_read_group_platform_unit_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Platform_Unit

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Platform_Unit :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Platform_Unit -> Rep SAM_V1_6_Read_Group_Platform_Unit x

to :: Rep SAM_V1_6_Read_Group_Platform_Unit x -> SAM_V1_6_Read_Group_Platform_Unit

Show SAM_V1_6_Read_Group_Platform_Unit

Show instance for SAM_V1_6_Read_Group_Platform_Unit.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Platform_Unit -> ShowS

show :: SAM_V1_6_Read_Group_Platform_Unit -> String

showList :: [SAM_V1_6_Read_Group_Platform_Unit] -> ShowS

Eq SAM_V1_6_Read_Group_Platform_Unit

Eq instance for SAM_V1_6_Read_Group_Platform_Unit.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Platform_Unit -> SAM_V1_6_Read_Group_Platform_Unit -> Bool

(/=) :: SAM_V1_6_Read_Group_Platform_Unit -> SAM_V1_6_Read_Group_Platform_Unit -> Bool

type Rep SAM_V1_6_Read_Group_Platform_Unit

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Platform_Unit = D1 ('MetaData "SAM_V1_6_Read_Group_Platform_Unit" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Platform_Unit" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_unit_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_unit_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

data SAM_V1_6_Read_Group_Sample

SM tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Sample

Fields

• sam_v1_6_read_group_sample_tag :: Seq Word8
• sam_v1_6_read_group_sample_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Sample

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Sample :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Sample -> Rep SAM_V1_6_Read_Group_Sample x

to :: Rep SAM_V1_6_Read_Group_Sample x -> SAM_V1_6_Read_Group_Sample

Show SAM_V1_6_Read_Group_Sample

Show instance for SAM_V1_6_Read_Group_Sample.

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Sample -> ShowS

show :: SAM_V1_6_Read_Group_Sample -> String

showList :: [SAM_V1_6_Read_Group_Sample] -> ShowS

Eq SAM_V1_6_Read_Group_Sample

Eq instance for SAM_V1_6_Read_Group_Sample.

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Sample -> SAM_V1_6_Read_Group_Sample -> Bool

(/=) :: SAM_V1_6_Read_Group_Sample -> SAM_V1_6_Read_Group_Sample -> Bool

type Rep SAM_V1_6_Read_Group_Sample

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Sample = D1 ('MetaData "SAM_V1_6_Read_Group_Sample" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.2.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group_Sample" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_sample_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Seq Word8)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_sample_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))