Copyright	(c) HyraxBio 2018
License	BSD3
Maintainer	andre@hyraxbio.co.za, andre@andrevdm.com
Stability	beta
Safe Haskell	Safe-Inferred
Language	Haskell2010

Hyrax.Abif.Fasta

Description

Functionality for reading FASTA files

Synopsis

data Fasta = Fasta {
- fastaName :: !Text
- fastaRead :: !Text
}
parseFasta :: Text -> Either Text [Fasta]

Documentation

data Fasta Source #

FASTA data

Constructors

Fasta
Fields fastaName :: !Text Name fastaRead :: !Text Data

Instances

Instances details

Show Fasta Source #
Instance details Defined in Hyrax.Abif.Fasta Methods showsPrec :: Int -> Fasta -> ShowS # show :: Fasta -> String # showList :: [Fasta] -> ShowS #
Eq Fasta Source #
Instance details Defined in Hyrax.Abif.Fasta Methods (==) :: Fasta -> Fasta -> Bool # (/=) :: Fasta -> Fasta -> Bool #

parseFasta :: Text -> Either Text [Fasta] Source #

Parse the data for a single FASTA into a list of Fasta values. Single and multi-line FASTAs are supported. Used by Hyrax.Abif.Generate to read weighted-FASTAs