Index
| AlphabetArray | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| AlphabetArrayValue | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| alphabetArrayValues | Bio.MemeData, Bio.MemeXML |
| AlphabetMatrix | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| alphabetMatrixArrays | Bio.MemeData, Bio.MemeXML |
| atId | Bio.MemeXML |
| atTag | Bio.MemeXML |
| BackgroundFrequencies | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| backgroundFrequencies | Bio.MemeData, Bio.MemeXML |
| backgroundFrequenciesAlphabetArray | Bio.MemeData, Bio.MemeXML |
| beta | Bio.MemeData, Bio.MemeXML |
| commandLine | Bio.MemeData, Bio.MemeXML |
| ContributingSite | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| contributingSite | Bio.MemeData, Bio.MemeXML |
| contributingSiteId | Bio.MemeData, Bio.MemeXML |
| contributingSiteLeftFlank | Bio.MemeData, Bio.MemeXML |
| contributingSitePosition | Bio.MemeData, Bio.MemeXML |
| contributingSitePvalue | Bio.MemeData, Bio.MemeXML |
| contributingSiteRightFlank | Bio.MemeData, Bio.MemeXML |
| contributingSiteStrand | Bio.MemeData, Bio.MemeXML |
| distance | Bio.MemeData, Bio.MemeXML |
| endGaps | Bio.MemeData, Bio.MemeXML |
| evalueThreshold | Bio.MemeData, Bio.MemeXML |
| frequency | Bio.MemeData, Bio.MemeXML |
| getAmbigs | Bio.MemeXML |
| getBackgroundFrequencies | Bio.MemeXML |
| getContributingSite | Bio.MemeXML |
| getLetter | Bio.MemeXML |
| getLetterFrequencies | Bio.MemeXML |
| getMemeAlphabet | Bio.MemeXML |
| getMemeResult | Bio.MemeXML |
| getModel | Bio.MemeXML |
| getMotif | Bio.MemeXML |
| getScannedSite | Bio.MemeXML |
| getScannedSites | Bio.MemeXML |
| getScannedSiteSummary | Bio.MemeXML |
| getSequence | Bio.MemeXML |
| getTrainingSet | Bio.MemeXML |
| host | Bio.MemeData, Bio.MemeXML |
| LetterFrequencies | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| letterFrequenciesAlphabetArray | Bio.MemeData, Bio.MemeXML |
| letterId | Bio.MemeData, Bio.MemeXML |
| LetterReference | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| letterReference | Bio.MemeData, Bio.MemeXML |
| maxiter | Bio.MemeData, Bio.MemeXML |
| maxSites | Bio.MemeData, Bio.MemeXML |
| maxWidth | Bio.MemeData, Bio.MemeXML |
| MemeAlphabet | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| memeAlphabetId | Bio.MemeData, Bio.MemeXML |
| memeAlphabetLength | Bio.MemeData, Bio.MemeXML |
| memeAlphabetLetters | Bio.MemeData, Bio.MemeXML |
| memeAmbigLetters | Bio.MemeData, Bio.MemeXML |
| MemeAmbigs | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| MemeLetter | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| memeLetterId | Bio.MemeData, Bio.MemeXML |
| memeLetterSymbol | Bio.MemeData, Bio.MemeXML |
| memerelease | Bio.MemeData, Bio.MemeXML |
| MemeResult | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| memeversion | Bio.MemeData, Bio.MemeXML |
| minic | Bio.MemeData, Bio.MemeXML |
| minSites | Bio.MemeData, Bio.MemeXML |
| minWidth | Bio.MemeData, Bio.MemeXML |
| Model | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| model | Bio.MemeData, Bio.MemeXML |
| modelType | Bio.MemeData, Bio.MemeXML |
| Motif | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| motifBayesTreshold | Bio.MemeData, Bio.MemeXML |
| motifContributingsites | Bio.MemeData, Bio.MemeXML |
| motifElapsedTime | Bio.MemeData, Bio.MemeXML |
| motifEvalue | Bio.MemeData, Bio.MemeXML |
| motifIc | Bio.MemeData, Bio.MemeXML |
| motifId | Bio.MemeData, Bio.MemeXML |
| motifLlr | Bio.MemeData, Bio.MemeXML |
| motifName | Bio.MemeData, Bio.MemeXML |
| motifProbabilites | Bio.MemeData, Bio.MemeXML |
| motifRe | Bio.MemeData, Bio.MemeXML |
| motifRegularexpression | Bio.MemeData, Bio.MemeXML |
| motifs | Bio.MemeData, Bio.MemeXML |
| motifScores | Bio.MemeData, Bio.MemeXML |
| motifSites | Bio.MemeData, Bio.MemeXML |
| motifWidth | Bio.MemeData, Bio.MemeXML |
| nmotifs | Bio.MemeData, Bio.MemeXML |
| numPositions | Bio.MemeData, Bio.MemeXML |
| numSequences | Bio.MemeData, Bio.MemeXML |
| numSites | Bio.MemeData, Bio.MemeXML |
| objectFunction | Bio.MemeData, Bio.MemeXML |
| parseXML | Bio.MemeXML |
| position | Bio.MemeData, Bio.MemeXML |
| prior | Bio.MemeData, Bio.MemeXML |
| priorsFile | Bio.MemeData, Bio.MemeXML |
| prob | Bio.MemeData, Bio.MemeXML |
| Propabilities | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| propabilitiesAlphabetMatrix | Bio.MemeData, Bio.MemeXML |
| pThresh | Bio.MemeData, Bio.MemeXML |
| reasonForStopping | Bio.MemeData, Bio.MemeXML |
| rstrip | Bio.MemeXML |
| ScannedSite | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| scannedSiteArray | Bio.MemeData, Bio.MemeXML |
| scannedsiteMotifId | Bio.MemeData, Bio.MemeXML |
| scannedSitePvalue | Bio.MemeData, Bio.MemeXML |
| ScannedSites | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| scannedSites | Bio.MemeData, Bio.MemeXML |
| scannedSitesPvalue | Bio.MemeData, Bio.MemeXML |
| scannedsitesSequenceId | Bio.MemeData, Bio.MemeXML |
| ScannedSiteSummary | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| scannedSiteSummary | Bio.MemeData, Bio.MemeXML |
| scoreAlphabetMatrix | Bio.MemeData, Bio.MemeXML |
| Scores | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| seed | Bio.MemeData, Bio.MemeXML |
| seqfrac | Bio.MemeData, Bio.MemeXML |
| Sequence | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| sequenceId | Bio.MemeData, Bio.MemeXML |
| sequenceLength | Bio.MemeData, Bio.MemeXML |
| sequenceName | Bio.MemeData, Bio.MemeXML |
| sequenceWeight | Bio.MemeData, Bio.MemeXML |
| Site | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| siteLetterReferences | Bio.MemeData, Bio.MemeXML |
| source | Bio.MemeData, Bio.MemeXML |
| spFuzz | Bio.MemeData, Bio.MemeXML |
| spMap | Bio.MemeData, Bio.MemeXML |
| strand | Bio.MemeData, Bio.MemeXML |
| strands | Bio.MemeData, Bio.MemeXML |
| TrainingSet | |
| 1 (Type/Class) | Bio.MemeData, Bio.MemeXML |
| 2 (Data Constructor) | Bio.MemeData, Bio.MemeXML |
| trainingset | Bio.MemeData, Bio.MemeXML |
| trainingsetAlphabet | Bio.MemeData, Bio.MemeXML |
| trainingsetAmbigs | Bio.MemeData, Bio.MemeXML |
| trainingsetDatafile | Bio.MemeData, Bio.MemeXML |
| trainingsetLength | Bio.MemeData, Bio.MemeXML |
| trainingsetLetterFrequencies | Bio.MemeData, Bio.MemeXML |
| trainingsetSequences | Bio.MemeData, Bio.MemeXML |
| wg | Bio.MemeData, Bio.MemeXML |
| wnSites | Bio.MemeData, Bio.MemeXML |
| ws | Bio.MemeData, Bio.MemeXML |