Build #1 for samtools-0.2.3
| Package | samtools-0.2.3 |
|---|
| Install | InstallOk |
|---|---|
| Docs | Ok |
| Tests | NotTried |
| Time submitted | unknown |
|---|---|
| Compiler | ghc-7.6.3 |
| OS | linux |
| Arch | x86_64 |
| Dependencies | vector-0.10.11.0, seqloc-0.5.1.1, process-1.1.0.2, filepath-1.3.0.1, bytestring-0.10.0.2, base-4.6.0.1 |
| Flags | -tests |
Code Coverage
No Code Coverage was submitted for this report.
Build log
[view raw]
Resolving dependencies...
Configuring hashable-1.2.2.0...
Building hashable-1.2.2.0...
Preprocessing library hashable-1.2.2.0...
[1 of 3] Compiling Data.Hashable.Class ( Data/Hashable/Class.hs, dist/build/Data/Hashable/Class.o )
[2 of 3] Compiling Data.Hashable.Generic ( Data/Hashable/Generic.hs, dist/build/Data/Hashable/Generic.o )
[3 of 3] Compiling Data.Hashable ( Data/Hashable.hs, dist/build/Data/Hashable.o )
In-place registering hashable-1.2.2.0...
Running Haddock for hashable-1.2.2.0...
Running hscolour for hashable-1.2.2.0...
Preprocessing library hashable-1.2.2.0...
Preprocessing library hashable-1.2.2.0...
Haddock coverage:
100% ( 11 / 11) in 'Data.Hashable.Class'
100% ( 1 / 1) in 'Data.Hashable.Generic'
100% ( 22 / 22) in 'Data.Hashable'
Warning: Data.Hashable: could not find link destinations for:
Data.Hashable.Class.GHashable
Documentation created: dist/doc/html/hashable/index.html,
dist/doc/html/hashable/hashable.txt
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/hashable-1.2.2.0
Registering hashable-1.2.2.0...
Installed hashable-1.2.2.0
Configuring primitive-0.5.3.0...
Building primitive-0.5.3.0...
Preprocessing library primitive-0.5.3.0...
[ 1 of 10] Compiling Data.Primitive.Internal.Compat ( Data/Primitive/Internal/Compat.hs, dist/build/Data/Primitive/Internal/Compat.o )
[ 2 of 10] Compiling Data.Primitive.MachDeps ( Data/Primitive/MachDeps.hs, dist/build/Data/Primitive/MachDeps.o )
[ 3 of 10] Compiling Data.Primitive.Internal.Operations ( Data/Primitive/Internal/Operations.hs, dist/build/Data/Primitive/Internal/Operations.o )
[ 4 of 10] Compiling Control.Monad.Primitive ( Control/Monad/Primitive.hs, dist/build/Control/Monad/Primitive.o )
[ 5 of 10] Compiling Data.Primitive.Types ( Data/Primitive/Types.hs, dist/build/Data/Primitive/Types.o )
[ 6 of 10] Compiling Data.Primitive.Array ( Data/Primitive/Array.hs, dist/build/Data/Primitive/Array.o )
Data/Primitive/Array.hs:32:1: Warning:
The import of `Control.Monad.ST' is redundant
except perhaps to import instances from `Control.Monad.ST'
To import instances alone, use: import Control.Monad.ST()
[ 7 of 10] Compiling Data.Primitive.ByteArray ( Data/Primitive/ByteArray.hs, dist/build/Data/Primitive/ByteArray.o )
[ 8 of 10] Compiling Data.Primitive.Addr ( Data/Primitive/Addr.hs, dist/build/Data/Primitive/Addr.o )
[ 9 of 10] Compiling Data.Primitive ( Data/Primitive.hs, dist/build/Data/Primitive.o )
[10 of 10] Compiling Data.Primitive.MutVar ( Data/Primitive/MutVar.hs, dist/build/Data/Primitive/MutVar.o )
In-place registering primitive-0.5.3.0...
Running Haddock for primitive-0.5.3.0...
Running hscolour for primitive-0.5.3.0...
Preprocessing library primitive-0.5.3.0...
Preprocessing library primitive-0.5.3.0...
Data/Primitive/Array.hs:32:1: Warning:
The import of `Control.Monad.ST' is redundant
except perhaps to import instances from `Control.Monad.ST'
To import instances alone, use: import Control.Monad.ST()
Haddock coverage:
67% ( 2 / 3) in 'Data.Primitive.Internal.Compat'
3% ( 1 / 35) in 'Data.Primitive.MachDeps'
3% ( 1 / 29) in 'Data.Primitive.Internal.Operations'
Warning: Control.Monad.Primitive: We do not support associated types in instances yet. These instances are affected:
Control.Monad.Primitive.PrimMonad GHC.Types.IO, Control.Monad.Primitive.PrimMonad (GHC.ST.ST s)
71% ( 10 / 14) in 'Control.Monad.Primitive'
100% ( 3 / 3) in 'Data.Primitive.Types'
100% ( 15 / 15) in 'Data.Primitive.Array'
93% ( 27 / 29) in 'Data.Primitive.ByteArray'
100% ( 16 / 16) in 'Data.Primitive.Addr'
100% ( 7 / 7) in 'Data.Primitive'
100% ( 9 / 9) in 'Data.Primitive.MutVar'
Documentation created: dist/doc/html/primitive/index.html,
dist/doc/html/primitive/primitive.txt
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/primitive-0.5.3.0
Registering primitive-0.5.3.0...
Installed primitive-0.5.3.0
[1 of 1] Compiling Main ( /tmp/system-filepath-0.4.12-7468/system-filepath-0.4.12/Setup.hs, /tmp/system-filepath-0.4.12-7468/system-filepath-0.4.12/dist/setup/Main.o )
Linking /tmp/system-filepath-0.4.12-7468/system-filepath-0.4.12/dist/setup/setup ...
Configuring system-filepath-0.4.12...
Building system-filepath-0.4.12...
Preprocessing library system-filepath-0.4.12...
[1 of 4] Compiling Filesystem.Path.Internal ( lib/Filesystem/Path/Internal.hs, dist/build/Filesystem/Path/Internal.o )
[2 of 4] Compiling Filesystem.Path ( lib/Filesystem/Path.hs, dist/build/Filesystem/Path.o )
[3 of 4] Compiling Filesystem.Path.Rules ( lib/Filesystem/Path/Rules.hs, dist/build/Filesystem/Path/Rules.o )
[4 of 4] Compiling Filesystem.Path.CurrentOS ( lib/Filesystem/Path/CurrentOS.hs, dist/build/Filesystem/Path/CurrentOS.o )
In-place registering system-filepath-0.4.12...
Running Haddock for system-filepath-0.4.12...
Running hscolour for system-filepath-0.4.12...
Preprocessing library system-filepath-0.4.12...
Preprocessing library system-filepath-0.4.12...
dist/build/tmp-7839/lib/Filesystem/Path/CurrentOS.hs:37:1: Warning:
The qualified import of `Data.ByteString' is redundant
except perhaps to import instances from `Data.ByteString'
To import instances alone, use: import Data.ByteString()
Haddock coverage:
9% ( 2 / 23) in 'Filesystem.Path.Internal'
97% ( 33 / 34) in 'Filesystem.Path'
95% ( 18 / 19) in 'Filesystem.Path.Rules'
93% ( 13 / 14) in 'Filesystem.Path.CurrentOS'
Documentation created: dist/doc/html/system-filepath/index.html,
dist/doc/html/system-filepath/system-filepath.txt
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/system-filepath-0.4.12
Registering system-filepath-0.4.12...
Installed system-filepath-0.4.12
Configuring scientific-0.3.2.1...
Building scientific-0.3.2.1...
Preprocessing library scientific-0.3.2.1...
[1 of 4] Compiling Math.NumberTheory.Logarithms ( src/Math/NumberTheory/Logarithms.hs, dist/build/Math/NumberTheory/Logarithms.o )
[2 of 4] Compiling Data.Scientific ( src/Data/Scientific.hs, dist/build/Data/Scientific.o )
[3 of 4] Compiling Data.Text.Lazy.Builder.Scientific ( src/Data/Text/Lazy/Builder/Scientific.hs, dist/build/Data/Text/Lazy/Builder/Scientific.o )
[4 of 4] Compiling Data.ByteString.Builder.Scientific ( src/Data/ByteString/Builder/Scientific.hs, dist/build/Data/ByteString/Builder/Scientific.o )
In-place registering scientific-0.3.2.1...
Running Haddock for scientific-0.3.2.1...
Running hscolour for scientific-0.3.2.1...
Preprocessing library scientific-0.3.2.1...
Preprocessing library scientific-0.3.2.1...
Haddock coverage:
100% ( 2 / 2) in 'Math.NumberTheory.Logarithms'
100% ( 17 / 17) in 'Data.Scientific'
75% ( 3 / 4) in 'Data.Text.Lazy.Builder.Scientific'
75% ( 3 / 4) in 'Data.ByteString.Builder.Scientific'
Warning: Data.Scientific: could not find link destinations for:
Data.Scientific.whenFloating
Documentation created: dist/doc/html/scientific/index.html,
dist/doc/html/scientific/scientific.txt
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/scientific-0.3.2.1
Registering scientific-0.3.2.1...
Installed scientific-0.3.2.1
Configuring vector-0.10.11.0...
Building vector-0.10.11.0...
Preprocessing library vector-0.10.11.0...
[ 1 of 19] Compiling Data.Vector.Storable.Internal ( Data/Vector/Storable/Internal.hs, dist/build/Data/Vector/Storable/Internal.o )
[ 2 of 19] Compiling Data.Vector.Fusion.Util ( Data/Vector/Fusion/Util.hs, dist/build/Data/Vector/Fusion/Util.o )
[ 3 of 19] Compiling Data.Vector.Fusion.Stream.Size ( Data/Vector/Fusion/Stream/Size.hs, dist/build/Data/Vector/Fusion/Stream/Size.o )
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `*'
In the instance declaration for `Num Size'
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `abs'
In the instance declaration for `Num Size'
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `signum'
In the instance declaration for `Num Size'
[ 4 of 19] Compiling Data.Vector.Internal.Check ( Data/Vector/Internal/Check.hs, dist/build/Data/Vector/Internal/Check.o )
[ 5 of 19] Compiling Data.Vector.Fusion.Stream.Monadic ( Data/Vector/Fusion/Stream/Monadic.hs, dist/build/Data/Vector/Fusion/Stream/Monadic.o )
Loading package ghc-prim ... linking ... done.
Loading package integer-gmp ... linking ... done.
Loading package base ... linking ... done.
Loading package primitive-0.5.3.0 ... linking ... done.
Loading package array-0.4.0.1 ... linking ... done.
Loading package deepseq-1.3.0.1 ... linking ... done.
[ 6 of 19] Compiling Data.Vector.Fusion.Stream ( Data/Vector/Fusion/Stream.hs, dist/build/Data/Vector/Fusion/Stream.o )
[ 7 of 19] Compiling Data.Vector.Generic.Mutable ( Data/Vector/Generic/Mutable.hs, dist/build/Data/Vector/Generic/Mutable.o )
[ 8 of 19] Compiling Data.Vector.Generic.Base ( Data/Vector/Generic/Base.hs, dist/build/Data/Vector/Generic/Base.o )
[ 9 of 19] Compiling Data.Vector.Generic.New ( Data/Vector/Generic/New.hs, dist/build/Data/Vector/Generic/New.o )
[10 of 19] Compiling Data.Vector.Generic ( Data/Vector/Generic.hs, dist/build/Data/Vector/Generic.o )
[11 of 19] Compiling Data.Vector.Primitive.Mutable ( Data/Vector/Primitive/Mutable.hs, dist/build/Data/Vector/Primitive/Mutable.o )
[12 of 19] Compiling Data.Vector.Primitive ( Data/Vector/Primitive.hs, dist/build/Data/Vector/Primitive.o )
[13 of 19] Compiling Data.Vector.Storable.Mutable ( Data/Vector/Storable/Mutable.hs, dist/build/Data/Vector/Storable/Mutable.o )
[14 of 19] Compiling Data.Vector.Storable ( Data/Vector/Storable.hs, dist/build/Data/Vector/Storable.o )
[15 of 19] Compiling Data.Vector.Unboxed.Base ( Data/Vector/Unboxed/Base.hs, dist/build/Data/Vector/Unboxed/Base.o )
[16 of 19] Compiling Data.Vector.Unboxed ( Data/Vector/Unboxed.hs, dist/build/Data/Vector/Unboxed.o )
[17 of 19] Compiling Data.Vector.Unboxed.Mutable ( Data/Vector/Unboxed/Mutable.hs, dist/build/Data/Vector/Unboxed/Mutable.o )
[18 of 19] Compiling Data.Vector.Mutable ( Data/Vector/Mutable.hs, dist/build/Data/Vector/Mutable.o )
[19 of 19] Compiling Data.Vector ( Data/Vector.hs, dist/build/Data/Vector.o )
In-place registering vector-0.10.11.0...
Running Haddock for vector-0.10.11.0...
Running hscolour for vector-0.10.11.0...
Preprocessing library vector-0.10.11.0...
Preprocessing library vector-0.10.11.0...
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `*'
In the instance declaration for `Num Size'
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `abs'
In the instance declaration for `Num Size'
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `signum'
In the instance declaration for `Num Size'
Haddock coverage:
25% ( 1 / 4) in 'Data.Vector.Storable.Internal'
100% ( 5 / 5) in 'Data.Vector.Fusion.Util'
100% ( 6 / 6) in 'Data.Vector.Fusion.Stream.Size'
11% ( 1 / 9) in 'Data.Vector.Internal.Check'
83% (104 /126) in 'Data.Vector.Fusion.Stream.Monadic'
85% ( 88 /104) in 'Data.Vector.Fusion.Stream'
64% ( 42 / 66) in 'Data.Vector.Generic.Mutable'
100% ( 3 / 3) in 'Data.Vector.Generic.Base'
5% ( 1 / 20) in 'Data.Vector.Generic.New'
93% (215 /232) in 'Data.Vector.Generic'
76% ( 38 / 50) in 'Data.Vector.Primitive.Mutable'
Warning: Data.Vector.Primitive: Instances of type and data families are not yet supported. Instances of the following families will be filtered out:
Mutable
97% (185 /191) in 'Data.Vector.Primitive'
79% ( 46 / 58) in 'Data.Vector.Storable.Mutable'
Warning: Data.Vector.Storable: Instances of type and data families are not yet supported. Instances of the following families will be filtered out:
Mutable
97% (194 /200) in 'Data.Vector.Storable'
Warning: Data.Vector.Unboxed.Base: Instances of type and data families are not yet supported. Instances of the following families will be filtered out:
Mutable, MVector, Vector
17% ( 1 / 6) in 'Data.Vector.Unboxed.Base'
96% (201 /210) in 'Data.Vector.Unboxed'
77% ( 47 / 61) in 'Data.Vector.Unboxed.Mutable'
76% ( 37 / 49) in 'Data.Vector.Mutable'
Warning: Data.Vector: Instances of type and data families are not yet supported. Instances of the following families will be filtered out:
Mutable
94% (199 /212) in 'Data.Vector'
Documentation created: dist/doc/html/vector/index.html,
dist/doc/html/vector/vector.txt
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/vector-0.10.11.0
Registering vector-0.10.11.0...
Installed vector-0.10.11.0
Configuring stringable-0.1.3...
Building stringable-0.1.3...
Preprocessing library stringable-0.1.3...
[1 of 1] Compiling Data.Stringable ( Data/Stringable.hs, dist/build/Data/Stringable.o )
In-place registering stringable-0.1.3...
Running Haddock for stringable-0.1.3...
Running hscolour for stringable-0.1.3...
Preprocessing library stringable-0.1.3...
Preprocessing library stringable-0.1.3...
Haddock coverage:
0% ( 0 / 3) in 'Data.Stringable'
Documentation created: dist/doc/html/stringable/index.html,
dist/doc/html/stringable/stringable.txt
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/stringable-0.1.3
Registering stringable-0.1.3...
Installed stringable-0.1.3
Configuring attoparsec-0.11.1.0...
Building attoparsec-0.11.1.0...
Preprocessing library attoparsec-0.11.1.0...
[ 1 of 18] Compiling Data.Attoparsec.Text.FastSet ( Data/Attoparsec/Text/FastSet.hs, dist/build/Data/Attoparsec/Text/FastSet.o )
[ 2 of 18] Compiling Data.Attoparsec.Zepto ( Data/Attoparsec/Zepto.hs, dist/build/Data/Attoparsec/Zepto.o )
[ 3 of 18] Compiling Data.Attoparsec.Number ( Data/Attoparsec/Number.hs, dist/build/Data/Attoparsec/Number.o )
[ 4 of 18] Compiling Data.Attoparsec.ByteString.FastSet ( Data/Attoparsec/ByteString/FastSet.hs, dist/build/Data/Attoparsec/ByteString/FastSet.o )
[ 5 of 18] Compiling Data.Attoparsec.Internal.Types ( Data/Attoparsec/Internal/Types.hs, dist/build/Data/Attoparsec/Internal/Types.o )
[ 6 of 18] Compiling Data.Attoparsec.Types ( Data/Attoparsec/Types.hs, dist/build/Data/Attoparsec/Types.o )
[ 7 of 18] Compiling Data.Attoparsec.Internal ( Data/Attoparsec/Internal.hs, dist/build/Data/Attoparsec/Internal.o )
[ 8 of 18] Compiling Data.Attoparsec.Combinator ( Data/Attoparsec/Combinator.hs, dist/build/Data/Attoparsec/Combinator.o )
[ 9 of 18] Compiling Data.Attoparsec.ByteString.Internal ( Data/Attoparsec/ByteString/Internal.hs, dist/build/Data/Attoparsec/ByteString/Internal.o )
[10 of 18] Compiling Data.Attoparsec.Text.Internal ( Data/Attoparsec/Text/Internal.hs, dist/build/Data/Attoparsec/Text/Internal.o )
[11 of 18] Compiling Data.Attoparsec.Text ( Data/Attoparsec/Text.hs, dist/build/Data/Attoparsec/Text.o )
[12 of 18] Compiling Data.Attoparsec.Text.Lazy ( Data/Attoparsec/Text/Lazy.hs, dist/build/Data/Attoparsec/Text/Lazy.o )
[13 of 18] Compiling Data.Attoparsec.ByteString ( Data/Attoparsec/ByteString.hs, dist/build/Data/Attoparsec/ByteString.o )
[14 of 18] Compiling Data.Attoparsec.ByteString.Char8 ( Data/Attoparsec/ByteString/Char8.hs, dist/build/Data/Attoparsec/ByteString/Char8.o )
[15 of 18] Compiling Data.Attoparsec.Char8 ( Data/Attoparsec/Char8.hs, dist/build/Data/Attoparsec/Char8.o )
[16 of 18] Compiling Data.Attoparsec.ByteString.Lazy ( Data/Attoparsec/ByteString/Lazy.hs, dist/build/Data/Attoparsec/ByteString/Lazy.o )
[17 of 18] Compiling Data.Attoparsec.Lazy ( Data/Attoparsec/Lazy.hs, dist/build/Data/Attoparsec/Lazy.o )
[18 of 18] Compiling Data.Attoparsec ( Data/Attoparsec.hs, dist/build/Data/Attoparsec.o )
In-place registering attoparsec-0.11.1.0...
Running Haddock for attoparsec-0.11.1.0...
Running hscolour for attoparsec-0.11.1.0...
Preprocessing library attoparsec-0.11.1.0...
Preprocessing library attoparsec-0.11.1.0...
Haddock coverage:
70% ( 7 / 10) in 'Data.Attoparsec.Text.FastSet'
100% ( 7 / 7) in 'Data.Attoparsec.Zepto'
100% ( 2 / 2) in 'Data.Attoparsec.Number'
69% ( 9 / 13) in 'Data.Attoparsec.ByteString.FastSet'
40% ( 4 / 10) in 'Data.Attoparsec.Internal.Types'
100% ( 3 / 3) in 'Data.Attoparsec.Types'
100% ( 2 / 2) in 'Data.Attoparsec.Internal'
100% ( 16 / 16) in 'Data.Attoparsec.Combinator'
91% ( 39 / 43) in 'Data.Attoparsec.ByteString.Internal'
95% ( 40 / 42) in 'Data.Attoparsec.Text.Internal'
97% ( 73 / 75) in 'Data.Attoparsec.Text'
100% ( 9 / 9) in 'Data.Attoparsec.Text.Lazy'
96% ( 50 / 52) in 'Data.Attoparsec.ByteString'
97% ( 75 / 77) in 'Data.Attoparsec.ByteString.Char8'
100% ( 2 / 2) in 'Data.Attoparsec.Char8'
100% ( 9 / 9) in 'Data.Attoparsec.ByteString.Lazy'
100% ( 2 / 2) in 'Data.Attoparsec.Lazy'
100% ( 2 / 2) in 'Data.Attoparsec'
Documentation created: dist/doc/html/attoparsec/index.html,
dist/doc/html/attoparsec/attoparsec.txt
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/attoparsec-0.11.1.0
Registering attoparsec-0.11.1.0...
Installed attoparsec-0.11.1.0
Configuring biocore-0.3.1...
Building biocore-0.3.1...
Preprocessing library biocore-0.3.1...
[1 of 3] Compiling Bio.Core.Strand ( src/Bio/Core/Strand.hs, dist/build/Bio/Core/Strand.o )
[2 of 3] Compiling Bio.Core.Sequence ( src/Bio/Core/Sequence.hs, dist/build/Bio/Core/Sequence.o )
[3 of 3] Compiling Bio.Core ( src/Bio/Core.hs, dist/build/Bio/Core.o )
In-place registering biocore-0.3.1...
Running Haddock for biocore-0.3.1...
Running hscolour for biocore-0.3.1...
Preprocessing library biocore-0.3.1...
Preprocessing library biocore-0.3.1...
Haddock coverage:
100% ( 2 / 2) in 'Bio.Core.Strand'
100% ( 15 / 15) in 'Bio.Core.Sequence'
100% ( 3 / 3) in 'Bio.Core'
Documentation created: dist/doc/html/biocore/index.html,
dist/doc/html/biocore/biocore.txt
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/biocore-0.3.1
Registering biocore-0.3.1...
Installed biocore-0.3.1
Configuring seqloc-0.5.1.1...
Building seqloc-0.5.1.1...
Preprocessing library seqloc-0.5.1.1...
[1 of 8] Compiling Bio.SeqLoc.SeqLike ( src/Bio/SeqLoc/SeqLike.hs, dist/build/Bio/SeqLoc/SeqLike.o )
[2 of 8] Compiling Bio.SeqLoc.LocRepr ( src/Bio/SeqLoc/LocRepr.hs, dist/build/Bio/SeqLoc/LocRepr.o )
[3 of 8] Compiling Bio.SeqLoc.Strand ( src/Bio/SeqLoc/Strand.hs, dist/build/Bio/SeqLoc/Strand.o )
[4 of 8] Compiling Bio.SeqLoc.Position ( src/Bio/SeqLoc/Position.hs, dist/build/Bio/SeqLoc/Position.o )
src/Bio/SeqLoc/Position.hs:24:1: Warning:
The import of `Control.Arrow' is redundant
except perhaps to import instances from `Control.Arrow'
To import instances alone, use: import Control.Arrow()
[5 of 8] Compiling Bio.SeqLoc.Location ( src/Bio/SeqLoc/Location.hs, dist/build/Bio/SeqLoc/Location.o )
[6 of 8] Compiling Bio.SeqLoc.SpliceLocation ( src/Bio/SeqLoc/SpliceLocation.hs, dist/build/Bio/SeqLoc/SpliceLocation.o )
[7 of 8] Compiling Bio.SeqLoc.OnSeq ( src/Bio/SeqLoc/OnSeq.hs, dist/build/Bio/SeqLoc/OnSeq.o )
src/Bio/SeqLoc/OnSeq.hs:80:3: Warning:
In the use of `seqlabel' (imported from Bio.Core.Sequence):
Deprecated: "Warning: 'seqlabel' is deprecated, use 'seqid' or 'seqheader' instead."
[8 of 8] Compiling Bio.SeqLoc.Transcript ( src/Bio/SeqLoc/Transcript.hs, dist/build/Bio/SeqLoc/Transcript.o )
In-place registering seqloc-0.5.1.1...
Running Haddock for seqloc-0.5.1.1...
Running hscolour for seqloc-0.5.1.1...
Preprocessing library seqloc-0.5.1.1...
Preprocessing library seqloc-0.5.1.1...
dist/build/tmp-7468/src/Bio/SeqLoc/Position.hs:24:1: Warning:
The import of `Control.Arrow' is redundant
except perhaps to import instances from `Control.Arrow'
To import instances alone, use: import Control.Arrow()
dist/build/tmp-7468/src/Bio/SeqLoc/OnSeq.hs:80:3: Warning:
In the use of `seqlabel' (imported from Bio.Core.Sequence):
Deprecated: "Warning: 'seqlabel' is deprecated, use 'seqid' or 'seqheader' instead."
Haddock coverage:
0% ( 0 / 2) in 'Bio.SeqLoc.SeqLike'
0% ( 0 / 6) in 'Bio.SeqLoc.LocRepr'
100% ( 5 / 5) in 'Bio.SeqLoc.Strand'
100% ( 8 / 8) in 'Bio.SeqLoc.Position'
83% ( 10 / 12) in 'Bio.SeqLoc.Location'
38% ( 3 / 8) in 'Bio.SeqLoc.SpliceLocation'
62% ( 8 / 13) in 'Bio.SeqLoc.OnSeq'
92% ( 12 / 13) in 'Bio.SeqLoc.Transcript'
Documentation created: dist/doc/html/seqloc/index.html,
dist/doc/html/seqloc/seqloc.txt
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/seqloc-0.5.1.1
Registering seqloc-0.5.1.1...
Installed seqloc-0.5.1.1
Downloading samtools-0.2.3...
Configuring samtools-0.2.3...
Building samtools-0.2.3...
Preprocessing library samtools-0.2.3...
[1 of 6] Compiling Bio.SamTools.LowLevel ( dist/build/Bio/SamTools/LowLevel.hs, dist/build/Bio/SamTools/LowLevel.o )
src/Bio/SamTools/LowLevel.chs:221:23: Warning:
Defined but not used: `res'
src/Bio/SamTools/LowLevel.chs:243:31: Warning:
Defined but not used: `res'
src/Bio/SamTools/LowLevel.chs:288:26: Warning:
Defined but not used: `res'
src/Bio/SamTools/LowLevel.chs:307:30: Warning:
Defined but not used: `res'
src/Bio/SamTools/LowLevel.chs:345:24: Warning:
Defined but not used: `res'
src/Bio/SamTools/LowLevel.chs:364:25: Warning:
Defined but not used: `res'
[2 of 6] Compiling Bio.SamTools.FaIdx ( src/Bio/SamTools/FaIdx.hs, dist/build/Bio/SamTools/FaIdx.o )
src/Bio/SamTools/FaIdx.hs:37:3: Warning:
In the use of `addMVarFinalizer'
(imported from Control.Concurrent.MVar):
Deprecated: "use mkWeakMVar instead"
[3 of 6] Compiling Bio.SamTools.Internal ( src/Bio/SamTools/Internal.hs, dist/build/Bio/SamTools/Internal.o )
[4 of 6] Compiling Bio.SamTools.Cigar ( src/Bio/SamTools/Cigar.hs, dist/build/Bio/SamTools/Cigar.o )
[5 of 6] Compiling Bio.SamTools.Bam ( src/Bio/SamTools/Bam.hs, dist/build/Bio/SamTools/Bam.o )
src/Bio/SamTools/Bam.hs:337:3: Warning:
In the use of `addMVarFinalizer'
(imported from Control.Concurrent.MVar):
Deprecated: "use mkWeakMVar instead"
src/Bio/SamTools/Bam.hs:419:3: Warning:
In the use of `addMVarFinalizer'
(imported from Control.Concurrent.MVar):
Deprecated: "use mkWeakMVar instead"
[6 of 6] Compiling Bio.SamTools.BamIndex ( src/Bio/SamTools/BamIndex.hs, dist/build/Bio/SamTools/BamIndex.o )
src/Bio/SamTools/BamIndex.hs:46:3: Warning:
In the use of `addMVarFinalizer'
(imported from Control.Concurrent.MVar):
Deprecated: "use mkWeakMVar instead"
src/Bio/SamTools/BamIndex.hs:75:3: Warning:
In the use of `addMVarFinalizer'
(imported from Control.Concurrent.MVar):
Deprecated: "use mkWeakMVar instead"
In-place registering samtools-0.2.3...
Running Haddock for samtools-0.2.3...
Running hscolour for samtools-0.2.3...
Preprocessing library samtools-0.2.3...
Preprocessing library samtools-0.2.3...
src/Bio/SamTools/LowLevel.chs:221:23: Warning:
Defined but not used: `res'
src/Bio/SamTools/LowLevel.chs:243:31: Warning:
Defined but not used: `res'
src/Bio/SamTools/LowLevel.chs:288:26: Warning:
Defined but not used: `res'
src/Bio/SamTools/LowLevel.chs:307:30: Warning:
Defined but not used: `res'
src/Bio/SamTools/LowLevel.chs:345:24: Warning:
Defined but not used: `res'
src/Bio/SamTools/LowLevel.chs:364:25: Warning:
Defined but not used: `res'
dist/build/tmp-7468/src/Bio/SamTools/FaIdx.hs:37:3: Warning:
In the use of `addMVarFinalizer'
(imported from Control.Concurrent.MVar):
Deprecated: "use mkWeakMVar instead"
dist/build/tmp-7468/src/Bio/SamTools/Bam.hs:337:3: Warning:
In the use of `addMVarFinalizer'
(imported from Control.Concurrent.MVar):
Deprecated: "use mkWeakMVar instead"
dist/build/tmp-7468/src/Bio/SamTools/Bam.hs:419:3: Warning:
In the use of `addMVarFinalizer'
(imported from Control.Concurrent.MVar):
Deprecated: "use mkWeakMVar instead"
dist/build/tmp-7468/src/Bio/SamTools/BamIndex.hs:46:3: Warning:
In the use of `addMVarFinalizer'
(imported from Control.Concurrent.MVar):
Deprecated: "use mkWeakMVar instead"
dist/build/tmp-7468/src/Bio/SamTools/BamIndex.hs:75:3: Warning:
In the use of `addMVarFinalizer'
(imported from Control.Concurrent.MVar):
Deprecated: "use mkWeakMVar instead"
Haddock coverage:
0% ( 0 /102) in 'Bio.SamTools.LowLevel'
56% ( 5 / 9) in 'Bio.SamTools.FaIdx'
64% ( 7 / 11) in 'Bio.SamTools.Internal'
67% ( 4 / 6) in 'Bio.SamTools.Cigar'
93% ( 64 / 69) in 'Bio.SamTools.Bam'
50% ( 6 / 12) in 'Bio.SamTools.BamIndex'
Warning: Bio.SamTools.Bam: could not find link destinations for:
Bio.SamTools.Bam.AuxGet
Documentation created: dist/doc/html/samtools/index.html,
dist/doc/html/samtools/samtools.txt
Installing library in
/srv/hackage/var/build/tmp-install/lib/x86_64-linux-ghc-7.6.3/samtools-0.2.3
Registering samtools-0.2.3...
Installed samtools-0.2.3
Test log
No test log was submitted for this report.