| Safe Haskell | None |
|---|---|
| Language | Haskell98 |
Bio.SamTools.Cigar
Description
Handling of the extended CIGAR pair-wise alignment descriptors
Documentation
Cigar entry types
Constructors
| Match | Aligned nucleotide, may be a match or mismatch |
| Ins | Insertion in read relative to reference |
| Del | Deletion from read relative to reference |
| RefSkip | Skipped reference bases, i.e., splice |
| SoftClip | Trimmed nucleotides, still present in read |
| HardClip | Trimmed nucleotides, removed from read |
| Pad | Deletion from padded reference |
Cigar entry including length