seqloc-0.1: Handle sequence locations for bioinformatics (Index)

seqloc-0.1: Handle sequence locations for bioinformatics

Index

acceptor	Bio.SeqLoc.Transcript
andSameSeq	Bio.SeqLoc.OnSeq
atPos	Bio.SeqLoc.Position
bounds	Bio.SeqLoc.Location
cds	Bio.SeqLoc.Transcript
cdsLocation	Bio.SeqLoc.Transcript
clocInto	Bio.SeqLoc.Location
clocOutof	Bio.SeqLoc.Location
compl	Bio.SeqLoc.Strand
concat	Bio.SeqLoc.SeqLike
ContigLoc	Bio.SeqLoc.Location
contigOverlaps	Bio.SeqLoc.Location
ContigSeqLoc	Bio.SeqLoc.OnSeq
donor	Bio.SeqLoc.Transcript
endPos	Bio.SeqLoc.Location
extend	Bio.SeqLoc.Location
fromBoundsStrand	Bio.SeqLoc.Location
fromContigs	Bio.SeqLoc.SpliceLocation
fromDonorAcceptor	Bio.SeqLoc.Transcript
fromPosLen	Bio.SeqLoc.Location
fromStartEnd	Bio.SeqLoc.Location
Fwd	Bio.SeqLoc.Strand
geneId	Bio.SeqLoc.Transcript
intron	Bio.SeqLoc.Transcript
Junction
1 (Type/Class)	Bio.SeqLoc.Transcript
2 (Data Constructor)	Bio.SeqLoc.Transcript
junctions	Bio.SeqLoc.Transcript
length
1 (Function)	Bio.SeqLoc.SeqLike
2 (Function)	Bio.SeqLoc.Location
Location	Bio.SeqLoc.Location
location	Bio.SeqLoc.Transcript
locInto	Bio.SeqLoc.SpliceLocation
locOutof	Bio.SeqLoc.SpliceLocation
LocRepr	Bio.SeqLoc.LocRepr
mergeAdjContigs	Bio.SeqLoc.SpliceLocation
mergeContigs	Bio.SeqLoc.SpliceLocation
ntAt	Bio.SeqLoc.SeqLike
Offset
1 (Type/Class)	Bio.SeqLoc.Position
2 (Data Constructor)	Bio.SeqLoc.Position
offset	Bio.SeqLoc.Position
offset5	Bio.SeqLoc.Location
offsetWithin	Bio.SeqLoc.Location
OnSeq
1 (Type/Class)	Bio.SeqLoc.OnSeq
2 (Data Constructor)	Bio.SeqLoc.OnSeq
onSeqName	Bio.SeqLoc.OnSeq
overlaps	Bio.SeqLoc.Location
Pos
1 (Type/Class)	Bio.SeqLoc.Position
2 (Data Constructor)	Bio.SeqLoc.Position
posInto	Bio.SeqLoc.Location
posOutof	Bio.SeqLoc.Location
posWithin	Bio.SeqLoc.Location
repr	Bio.SeqLoc.LocRepr
reprStr	Bio.SeqLoc.LocRepr
RevCompl	Bio.SeqLoc.Strand
revCompl	Bio.SeqLoc.Strand
seqData	Bio.SeqLoc.Location
seqDataPad	Bio.SeqLoc.Location
SeqLike	Bio.SeqLoc.SeqLike
SeqName
1 (Type/Class)	Bio.SeqLoc.OnSeq
2 (Data Constructor)	Bio.SeqLoc.OnSeq
SeqOffset	Bio.SeqLoc.OnSeq
SeqPos	Bio.SeqLoc.OnSeq
slide
1 (Function)	Bio.SeqLoc.Position
2 (Function)	Bio.SeqLoc.Location
sortContigs	Bio.SeqLoc.Transcript
SpliceLoc	Bio.SeqLoc.SpliceLocation
SpliceSeqLoc	Bio.SeqLoc.OnSeq
startPos	Bio.SeqLoc.Location
Strand	Bio.SeqLoc.Strand
strand
1 (Function)	Bio.SeqLoc.Position
2 (Function)	Bio.SeqLoc.Location
Stranded	Bio.SeqLoc.Strand
stranded	Bio.SeqLoc.Strand
subseq	Bio.SeqLoc.SeqLike
subseqPad	Bio.SeqLoc.SeqLike
toContigs	Bio.SeqLoc.Location
Transcript
1 (Type/Class)	Bio.SeqLoc.Transcript
2 (Data Constructor)	Bio.SeqLoc.Transcript
trxId	Bio.SeqLoc.Transcript
unOffset	Bio.SeqLoc.Position
unOnSeq	Bio.SeqLoc.OnSeq
unrepr	Bio.SeqLoc.LocRepr
unreprEither	Bio.SeqLoc.LocRepr
unreprErr	Bio.SeqLoc.LocRepr
unreprMaybe	Bio.SeqLoc.LocRepr
unSeqName	Bio.SeqLoc.OnSeq
utr3	Bio.SeqLoc.Transcript
utr5	Bio.SeqLoc.Transcript