Bio.SeqLoc.SpliceLocation

Data type for a more general sequence location consiting of disjoint ranges of positions on a sequence.

Throughout, sequence position refers to a Pos which includes a strand, as opposed to an offset, which refers to a Offset with no strand.

Sequence locations

data SpliceLoc

General (disjoint) sequence region consisting of a concatenated set of one or more contiguous regions.

Instances

Eq SpliceLoc

Ord SpliceLoc

Show SpliceLoc

LocRepr SpliceLoc

Stranded SpliceLoc

Location SpliceLoc

fromContigs :: [ContigLoc] -> Maybe SpliceLoc

locOutof :: Location l => SpliceLoc -> l -> Maybe SpliceLoc

locInto :: Location l => SpliceLoc -> l -> Maybe SpliceLoc

mergeContigs :: [ContigLoc] -> [ContigLoc]

mergeAdjContigs :: ContigLoc -> ContigLoc -> Maybe ContigLoc