seqloc-0.6: Handle sequence locations for bioinformatics

Safe HaskellNone
LanguageHaskell2010

Bio.SeqLoc.LocMap

Documentation

data LocMap a Source

Constructors

LocMap 

Fields

binSize :: !Offset
 
bins :: !(ShiftedVector [a])
 

Instances

Show a => Show (LocMap a) 

data SeqLocMap a Source

Constructors

SeqLocMap 

Fields

slmBinSize :: !Offset
 
locmaps :: !(HashMap SeqLabel (LocMap a))
 

Instances

Show a => Show (SeqLocMap a) 

emptyLM :: Offset -> LocMap a Source

insertLoc :: Location l => l -> a -> LocMap a -> LocMap a Source

queryLoc :: Location l => l -> LocMap a -> [a] Source

locBins :: Location l => l -> LocMap a -> [Int] Source

emptySLM :: Offset -> SeqLocMap a Source

insertSeqLoc :: Location l => OnSeq l -> a -> SeqLocMap a -> SeqLocMap a Source

querySeqLoc :: Location l => OnSeq l -> SeqLocMap a -> [a] Source

transcriptSeqLocMap :: Offset -> [Transcript] -> SeqLocMap Transcript Source