slynx-0.0.1: Handle molecular sequences

Copyright	(c) Dominik Schrempf 2018
License	GPL-3
Maintainer	dominik.schrempf@gmail.com
Stability	unstable
Portability	portable
Safe Haskell	None
Language	Haskell2010

Filter.Options

Description

Creation date: Sun Oct 7 17:29:45 2018.

Synopsis

data FilterRowsArguments = FilterRowsArguments {
- frAlphabet :: Alphabet
- frInFile :: Maybe FilePath
- frLonger :: Maybe Int
- frShorter :: Maybe Int
}
data FilterColumnsArguments = FilterColumnsArguments {
- fcAlphabet :: Alphabet
- fcInFile :: Maybe FilePath
- fcStandard :: Maybe Double
}
type FilterRows = LoggingT (ReaderT FilterRowsArguments IO)
type FilterColumns = LoggingT (ReaderT FilterColumnsArguments IO)
filterRowsArguments :: Parser FilterRowsArguments
filterColumnsArguments :: Parser FilterColumnsArguments

Documentation

data FilterRowsArguments Source #

Arguments needed for filtering sequences.

Constructors

FilterRowsArguments
Fields frAlphabet :: Alphabet frInFile :: Maybe FilePath frLonger :: Maybe Int frShorter :: Maybe Int

data FilterColumnsArguments Source #

Arguments needed for filtering columns of a multi sequence alignment.

Constructors

FilterColumnsArguments
Fields fcAlphabet :: Alphabet fcInFile :: Maybe FilePath fcStandard :: Maybe Double

type FilterRows = LoggingT (ReaderT FilterRowsArguments IO) Source #

Logger and Reader for sequence filtering.

type FilterColumns = LoggingT (ReaderT FilterColumnsArguments IO) Source #

Logger and Reader for column filtering.

filterRowsArguments :: Parser FilterRowsArguments Source #

Command line parser.

filterColumnsArguments :: Parser FilterColumnsArguments Source #

Command line parser.