SubSample.Options

Creation date: Sun Oct 7 17:29:45 2018.

Documentation

data SubSampleArguments

Data structure holding the Command line arguments.

Constructors

SubSampleArguments

Fields

• ssAlphabet :: Alphabet
• ssInFile :: Maybe FilePath
• ssNSites :: Int
• ssNAlignments :: Int
• ssMbSeed :: Maybe [Word32]

type SubSample = LoggingT (ReaderT SubSampleArguments IO)

The sub sample command can log stuff and read necessary arguments.

subSampleArguments :: Parser SubSampleArguments

Sub command parser.