slynx-0.0.1: Handle molecular sequences

Copyright	(c) Dominik Schrempf 2018
License	GPL-3
Maintainer	dominik.schrempf@gmail.com
Stability	unstable
Portability	portable
Safe Haskell	None
Language	Haskell2010

Translate.Options

Description

Creation date: Sun Oct 7 17:29:45 2018.

Synopsis

data TranslateArguments = TranslateArguments {
- trAlphabet :: Alphabet
- trInFile :: Maybe FilePath
- trReadingFrame :: Int
- trUniversalCode :: UniversalCode
}
type Translate = LoggingT (ReaderT TranslateArguments IO)
translateArguments :: Parser TranslateArguments

Documentation

data TranslateArguments Source #

Arguments needed to translate sequences.

Constructors

TranslateArguments
Fields trAlphabet :: Alphabet trInFile :: Maybe FilePath trReadingFrame :: Int trUniversalCode :: UniversalCode

type Translate = LoggingT (ReaderT TranslateArguments IO) Source #

Logger and Reader type.

translateArguments :: Parser TranslateArguments Source #

Command line parser.