slynx-0.1.0: Handle molecular sequences

Copyright	(c) Dominik Schrempf 2018
License	GPL-3
Maintainer	dominik.schrempf@gmail.com
Stability	unstable
Portability	portable
Safe Haskell	None
Language	Haskell2010

Filter.Options

Description

Creation date: Sun Oct 7 17:29:45 2018.

Synopsis

data FilterRowsArguments = FilterRowsArguments {
- frAlphabet :: Alphabet
- frInFile :: Maybe FilePath
- frLonger :: Maybe Int
- frShorter :: Maybe Int
- frStandard :: Bool
}
data FilterColsArguments = FilterColsArguments {
- fcAlphabet :: Alphabet
- fcInFile :: Maybe FilePath
- fcStandard :: Maybe Double
}
type FilterRows = LoggingT (ReaderT FilterRowsArguments IO)
type FilterCols = LoggingT (ReaderT FilterColsArguments IO)
filterRowsArguments :: Parser FilterRowsArguments
filterColsArguments :: Parser FilterColsArguments

Documentation

data FilterRowsArguments Source #

Arguments needed for filtering sequences.

Constructors

FilterRowsArguments
Fields frAlphabet :: Alphabet frInFile :: Maybe FilePath frLonger :: Maybe Int frShorter :: Maybe Int frStandard :: Bool

data FilterColsArguments Source #

Arguments needed for filtering columns of a multi sequence alignment.

Constructors

FilterColsArguments
Fields fcAlphabet :: Alphabet fcInFile :: Maybe FilePath fcStandard :: Maybe Double

type FilterRows = LoggingT (ReaderT FilterRowsArguments IO) Source #

Logger and Reader for sequence filtering.

type FilterCols = LoggingT (ReaderT FilterColsArguments IO) Source #

Logger and Reader for column filtering.

filterRowsArguments :: Parser FilterRowsArguments Source #

Command line parser.

filterColsArguments :: Parser FilterColsArguments Source #

Command line parser.