Copyright	(c) Dominik Schrempf 2018
License	GPL-3.0-or-later
Maintainer	dominik.schrempf@gmail.com
Stability	unstable
Portability	portable
Safe Haskell	None
Language	Haskell2010

SLynx.Filter.Options

Description

Creation date: Sun Oct 7 17:29:45 2018.

Synopsis

data FilterRowsArguments = FilterRowsArguments {
- frAlphabet :: Alphabet
- frInFile :: FilePath
- frLonger :: Maybe Int
- frShorter :: Maybe Int
- frStandard :: Bool
}
data FilterColsArguments = FilterColsArguments {
- fcAlphabet :: Alphabet
- fcInFile :: FilePath
- fcStandard :: Maybe Double
}
filterRowsArguments :: Parser FilterRowsArguments
filterColsArguments :: Parser FilterColsArguments

Documentation

data FilterRowsArguments Source #

Arguments needed for filtering sequences.

Constructors

FilterRowsArguments
Fields frAlphabet :: Alphabet frInFile :: FilePath frLonger :: Maybe Int frShorter :: Maybe Int frStandard :: Bool

Instances

Eq FilterRowsArguments Source #
Instance details Defined in SLynx.Filter.Options Methods (==) :: FilterRowsArguments -> FilterRowsArguments -> Bool # (/=) :: FilterRowsArguments -> FilterRowsArguments -> Bool #
Show FilterRowsArguments Source #
Instance details Defined in SLynx.Filter.Options Methods showsPrec :: Int -> FilterRowsArguments -> ShowS # show :: FilterRowsArguments -> String # showList :: [FilterRowsArguments] -> ShowS #
Generic FilterRowsArguments Source #
Instance details Defined in SLynx.Filter.Options Associated Types type Rep FilterRowsArguments :: Type -> Type # Methods from :: FilterRowsArguments -> Rep FilterRowsArguments x # to :: Rep FilterRowsArguments x -> FilterRowsArguments #
ToJSON FilterRowsArguments Source #
Instance details Defined in SLynx.Filter.Options Methods toJSON :: FilterRowsArguments -> Value # toEncoding :: FilterRowsArguments -> Encoding # toJSONList :: [FilterRowsArguments] -> Value # toEncodingList :: [FilterRowsArguments] -> Encoding #
FromJSON FilterRowsArguments Source #
Instance details Defined in SLynx.Filter.Options Methods parseJSON :: Value -> Parser FilterRowsArguments # parseJSONList :: Value -> Parser [FilterRowsArguments] #
Reproducible FilterRowsArguments Source #
Instance details Defined in SLynx.Filter.Options Methods inFiles :: FilterRowsArguments -> [FilePath] # outSuffixes :: FilterRowsArguments -> [String] # getSeed :: FilterRowsArguments -> Maybe Seed # setSeed :: FilterRowsArguments -> Vector Word32 -> FilterRowsArguments # parser :: Parser FilterRowsArguments # cmdName :: String # cmdDsc :: [String] # cmdFtr :: [String] #
type Rep FilterRowsArguments Source #
Instance details Defined in SLynx.Filter.Options type Rep FilterRowsArguments = D1 (MetaData "FilterRowsArguments" "SLynx.Filter.Options" "slynx-0.4.1-5ouuAn20stUBa6Pr27kdof" False) (C1 (MetaCons "FilterRowsArguments" PrefixI True) ((S1 (MetaSel (Just "frAlphabet") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Alphabet) :: S1 (MetaSel (Just "frInFile") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 FilePath)) :: (S1 (MetaSel (Just "frLonger") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe Int)) :: (S1 (MetaSel (Just "frShorter") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe Int)) :: S1 (MetaSel (Just "frStandard") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Bool)))))

data FilterColsArguments Source #

Arguments needed for filtering columns of a multi sequence alignment.

Constructors

FilterColsArguments
Fields fcAlphabet :: Alphabet fcInFile :: FilePath fcStandard :: Maybe Double

Instances

Eq FilterColsArguments Source #
Instance details Defined in SLynx.Filter.Options Methods (==) :: FilterColsArguments -> FilterColsArguments -> Bool # (/=) :: FilterColsArguments -> FilterColsArguments -> Bool #
Show FilterColsArguments Source #
Instance details Defined in SLynx.Filter.Options Methods showsPrec :: Int -> FilterColsArguments -> ShowS # show :: FilterColsArguments -> String # showList :: [FilterColsArguments] -> ShowS #
Generic FilterColsArguments Source #
Instance details Defined in SLynx.Filter.Options Associated Types type Rep FilterColsArguments :: Type -> Type # Methods from :: FilterColsArguments -> Rep FilterColsArguments x # to :: Rep FilterColsArguments x -> FilterColsArguments #
ToJSON FilterColsArguments Source #
Instance details Defined in SLynx.Filter.Options Methods toJSON :: FilterColsArguments -> Value # toEncoding :: FilterColsArguments -> Encoding # toJSONList :: [FilterColsArguments] -> Value # toEncodingList :: [FilterColsArguments] -> Encoding #
FromJSON FilterColsArguments Source #
Instance details Defined in SLynx.Filter.Options Methods parseJSON :: Value -> Parser FilterColsArguments # parseJSONList :: Value -> Parser [FilterColsArguments] #
Reproducible FilterColsArguments Source #
Instance details Defined in SLynx.Filter.Options Methods inFiles :: FilterColsArguments -> [FilePath] # outSuffixes :: FilterColsArguments -> [String] # getSeed :: FilterColsArguments -> Maybe Seed # setSeed :: FilterColsArguments -> Vector Word32 -> FilterColsArguments # parser :: Parser FilterColsArguments # cmdName :: String # cmdDsc :: [String] # cmdFtr :: [String] #
type Rep FilterColsArguments Source #
Instance details Defined in SLynx.Filter.Options type Rep FilterColsArguments = D1 (MetaData "FilterColsArguments" "SLynx.Filter.Options" "slynx-0.4.1-5ouuAn20stUBa6Pr27kdof" False) (C1 (MetaCons "FilterColsArguments" PrefixI True) (S1 (MetaSel (Just "fcAlphabet") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Alphabet) :: (S1 (MetaSel (Just "fcInFile") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 FilePath) :: S1 (MetaSel (Just "fcStandard") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe Double)))))

filterRowsArguments :: Parser FilterRowsArguments Source #

Command line parser.

filterColsArguments :: Parser FilterColsArguments Source #

Command line parser.