slynx-0.7.0.1: Handle molecular sequences (Index)

slynx-0.7.0.1: Handle molecular sequences

Index

alphabetOpt	SLynx.Tools
argsEDMFile	SLynx.Simulate.Options
argsGammaParams	SLynx.Simulate.Options
argsLength	SLynx.Simulate.Options
argsMixtureModelString	SLynx.Simulate.Options
argsMixtureWeights	SLynx.Simulate.Options
argsSeed	SLynx.Simulate.Options
argsSiteprofilesFiles	SLynx.Simulate.Options
argsSubstitutionModelString	SLynx.Simulate.Options
argsTreeFile	SLynx.Simulate.Options
ccAlphabet	SLynx.Concatenate.Options
ccInFiles	SLynx.Concatenate.Options
CommandArguments	SLynx.Options
Concatenate	SLynx.Options
ConcatenateArguments
1 (Type/Class)	SLynx.Concatenate.Options
2 (Data Constructor)	SLynx.Concatenate.Options
concatenateArguments	SLynx.Concatenate.Options
concatenateCmd	SLynx.Concatenate.Concatenate
exAlphabet	SLynx.Examine.Options
Examine	SLynx.Options
ExamineArguments
1 (Type/Class)	SLynx.Examine.Options
2 (Data Constructor)	SLynx.Examine.Options
examineArguments	SLynx.Examine.Options
examineCmd	SLynx.Examine.Examine
exDivergence	SLynx.Examine.Options
exInFile	SLynx.Examine.Options
exPerSite	SLynx.Examine.Options
fcAlphabet	SLynx.Filter.Options
fcInFile	SLynx.Filter.Options
fcStandard	SLynx.Filter.Options
FilterCols	SLynx.Options
FilterColsArguments
1 (Type/Class)	SLynx.Filter.Options
2 (Data Constructor)	SLynx.Filter.Options
filterColsArguments	SLynx.Filter.Options
filterColsCmd	SLynx.Filter.Filter
FilterRows	SLynx.Options
FilterRowsArguments
1 (Type/Class)	SLynx.Filter.Options
2 (Data Constructor)	SLynx.Filter.Options
filterRowsArguments	SLynx.Filter.Options
filterRowsCmd	SLynx.Filter.Filter
frAlphabet	SLynx.Filter.Options
frInFile	SLynx.Filter.Options
frLonger	SLynx.Filter.Options
frShorter	SLynx.Filter.Options
frStandard	SLynx.Filter.Options
GammaRateHeterogeneityParams	SLynx.Simulate.Options
getOutSuffixes	SLynx.SubSample.Options
getPhyloModel	SLynx.Simulate.PhyloModel
readSeqs	SLynx.Tools
rSLynx	SLynx.SLynx
Simulate	SLynx.Options
SimulateArguments
1 (Type/Class)	SLynx.Simulate.Options
2 (Data Constructor)	SLynx.Simulate.Options
simulateArguments	SLynx.Simulate.Options
simulateCmd	SLynx.Simulate.Simulate
simulateFooter	SLynx.Simulate.Options
slynx	SLynx.SLynx
ssAlphabet	SLynx.SubSample.Options
ssInFile	SLynx.SubSample.Options
ssMbSeed	SLynx.SubSample.Options
ssNAlignments	SLynx.SubSample.Options
ssNSites	SLynx.SubSample.Options
SubSample	SLynx.Options
SubSampleArguments
1 (Type/Class)	SLynx.SubSample.Options
2 (Data Constructor)	SLynx.SubSample.Options
subSampleArguments	SLynx.SubSample.Options
subSampleCmd	SLynx.SubSample.SubSample
trAlphabet	SLynx.Translate.Options
Translate	SLynx.Options
TranslateArguments
1 (Type/Class)	SLynx.Translate.Options
2 (Data Constructor)	SLynx.Translate.Options
translateArguments	SLynx.Translate.Options
translateCmd	SLynx.Translate.Translate
trInFile	SLynx.Translate.Options
trReadingFrame	SLynx.Translate.Options
trUniversalCode	SLynx.Translate.Options