Distance.Options

Creation date: Thu Aug 29 13:02:22 2019.

Documentation

data DistanceArguments

Arguments needed to compute distance measures.

Constructors

DistanceArguments

Fields

• argsDistance :: DistanceMeasure
• argsNormalize :: Bool
• argsSummaryStatistics :: Bool
• argsMasterTreeFile :: Maybe FilePath
• argsNewickIqTree :: Bool
• argsInFiles :: [FilePath]

data DistanceMeasure

Supported distance measures.

Constructors

Symmetric

Symmetric distance.

IncompatibleSplit Double

Incompatible split distance; collapse nodes with branch support below given value.

BranchScore

Branch score distance.

Instances

Show DistanceMeasure

Defined in Distance.Options

Methods

showsPrec :: Int -> DistanceMeasure -> ShowS

show :: DistanceMeasure -> String

showList :: [DistanceMeasure] -> ShowS

type Distance = LoggingT (ReaderT DistanceArguments IO)

Logger and reader data type.

distanceArguments :: Parser DistanceArguments

COmmand line parser.

distanceFooter :: String

Information about provided distance types.