xsact-1.6: Cluster EST sequences Source code Contents Index

WordMap

Documentation

type WordMap = Map Key [Suffix] Source

type Key = Integer Source

genkeys :: Int -> Int -> EST -> [(Int, Key)] Source

genkeysN :: Int -> Int -> EST -> [(Int, Key)] Source

list2keys :: Int -> [Gene] -> [Key] Source

mkWordMap :: Int -> [EST] -> WordMap Source

get_k :: WordMap -> Int Source

wmlookup :: WordMap -> Key -> [Suffix] Source

n2i :: [Gene] -> Key Source

i2n :: Key -> [Gene] Source

i2s :: Key -> String Source

shift_left :: Int -> Key -> Gene -> Key Source

shift_right :: Int -> Key -> Gene -> Key Source

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