The Turner2004
data structure reflects the RNA (and DNA) energy
parameters known as the Turner 2004 data set.
In general, have a look here: http://rna.urmc.rochester.edu/NNDB/turner04/index.html where parameters are explained.
- type PP = (((Z :. Nuc) :. Nuc) :. Nuc) :. Nuc
- type PN = ((Z :. Nuc) :. Nuc) :. Nuc
- type PNN = (((Z :. Nuc) :. Nuc) :. Nuc) :. Nuc
- type PPNN = (PP :. Nuc) :. Nuc
- type PPNNN = PPNN :. Nuc
- type PPNNNN = PPNNN :. Nuc
- data Turner2004 = Turner2004 {
- stack :: PrimArray PP Double
- dangle3 :: PrimArray PN Double
- dangle5 :: PrimArray PN Double
- hairpinL :: PrimArray DIM1 Double
- hairpinMM :: PrimArray PNN Double
- hairpinLookup :: Map ByteString Double
- hairpinGGG :: Double
- hairpinCslope :: Double
- hairpinCintercept :: Double
- hairpinC3 :: Double
- bulgeL :: PrimArray DIM1 Double
- bulgeSingleC :: Double
- iloop1x1 :: PrimArray PPNN Double
- iloop2x1 :: PrimArray PPNNN Double
- iloop2x2 :: PrimArray PPNNNN Double
- iloopMM :: PrimArray PNN Double
- iloop2x3MM :: PrimArray PNN Double
- iloop1xnMM :: PrimArray PNN Double
- iloopL :: PrimArray DIM1 Double
- multiMM :: PrimArray PNN Double
- ninio :: Double
- maxNinio :: Double
- multiOffset :: Double
- multiNuc :: Double
- multiHelix :: Double
- multiAsym :: Double
- multiStrain :: Double
- extMM :: PrimArray PNN Double
- coaxial :: PrimArray PP Double
- coaxStack :: PrimArray PNN Double
- tStackCoax :: PrimArray PNN Double
- largeLoop :: Double
- termAU :: Double
- intermolecularInit :: Double
Documentation
data Turner2004 Source
Turner2004 | |
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