BiobaseHTTPTools: Tools to query Bioinformatics HTTP services e.g. Entrez, Ensembl.
BiobaseHTTP provides tools to interface the Bioinformatics REST services, currently Entrez, Ensembl.
Usage instructions can be found in the README
Currently following Tools are included:
FetchSequences: Retrieves sequence in fasta format
AccessionToTaxId: Converts NCBI accession number to taxonomy id
GeneIdToGOTerms: Retrieve GOterms for a Ensembl GeneId
GeneIdToUniProtId Retrieves UniProtId for a Ensembl GeneId
Downloads
- BiobaseHTTPTools-1.0.0.tar.gz [browse] (Cabal source package)
- Package description (revised from the package)
Note: This package has metadata revisions in the cabal description newer than included in the tarball. To unpack the package including the revisions, use 'cabal get'.
Maintainer's Corner
For package maintainers and hackage trustees
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Versions [RSS] | 1.0.0 |
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Dependencies | base (>=4.5 && <5), BiobaseFasta (==0.2.0.0), BiobaseHTTP (>=1.1.0), bytestring, cmdargs, containers, either-unwrap, hxt, text [details] |
Tested with | ghc ==8.4.3 |
License | GPL-3.0-only |
Author | Florian Eggenhofer |
Maintainer | egg@informatik.uni-freiburg.de |
Revised | Revision 1 made by FlorianEggenhofer at 2019-05-28T05:50:40Z |
Category | Bioinformatics |
Source repo | head: git clone https://github.com/eggzilla/BiobaseHTTPTools this: git clone https://github.com/eggzilla/BiobaseHTTPTools/tree/1.1.0(tag 1.1.0) |
Uploaded | by FlorianEggenhofer at 2018-12-13T19:11:11Z |
Distributions | |
Executables | GeneIdToGOTerms, GeneIdToUniProtId, AccessionToTaxId, FetchSequence |
Downloads | 837 total (1 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
Your Rating | |
Status | Docs not available [build log] All reported builds failed as of 2018-12-13 [all 3 reports] |