The BiobaseFasta package

[Tags: gpl, library, program]

Conduit-based handling of FASTA files. This library provides a streaming interface. The user selects a window size, then handles the window. For each window, the previous (past) window is available, in case some data sits on the boundary between windows.

FastaTool is a simple tool providing information on FASTA files, and allowing to extract sequences and subsequences.

The library is, in general, in a preview state. In cases where you need to scan large FASTA files fast and with low memory overhead, the streamFasta function, however, should already be useable enough.


Properties

Versions0.0.0.1, 0.0.0.2, 0.0.0.3, 0.0.0.4, 0.0.1.0
Dependenciesbase (>3 && <5), biocore (>=0.2), bytestring, cmdargs (==0.10.*), conduit (==0.5.*), containers, transformers
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2011-2013
AuthorChristian Hoener zu Siederdissen
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.tbi.univie.ac.at/~choener/
Source repositoryhead: git clone git://github.com/choener/BiobaseFasta
ExecutablesFastaTool
Upload dateFri Dec 6 21:54:37 UTC 2013
Uploaded byChristianHoener
Downloads731 total (79 in last 30 days)

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