BiobaseInfernal-0.5.4.1: Infernal data structures and tools

Index

accession 
1 (Function)Biobase.Infernal.CM
2 (Function)Biobase.Infernal.Clan, Biobase.Infernal
aliAnnotationBiobase.Infernal.VerboseHit.Internal
aliCMBiobase.Infernal.VerboseHit.Internal
AliGo 
1 (Type/Class)Biobase.Infernal.VerboseHit.Internal
2 (Data Constructor)Biobase.Infernal.VerboseHit.Internal
aliScaffoldBiobase.Infernal.VerboseHit.Internal
aliStrandBiobase.Infernal.VerboseHit.Internal
beginsBiobase.Infernal.CM
cFromFileBiobase.Infernal
Clan 
1 (Type/Class)Biobase.Infernal.Clan, Biobase.Infernal
2 (Data Constructor)Biobase.Infernal.Clan, Biobase.Infernal
classificationBiobase.Infernal.Taxonomy, Biobase.Infernal
CM 
1 (Type/Class)Biobase.Infernal.CM
2 (Data Constructor)Biobase.Infernal.CM
emissionBiobase.Infernal.CM
eneeByteStringBiobase.Infernal.VerboseHit.Export
eneeByteStringsBiobase.Infernal.VerboseHit.Export
eneeCMBiobase.Infernal.CM.Import
eneeSpeciesBiobase.Infernal.Taxonomy.Import
eneeTabularHitBiobase.Infernal.TabularHit.Import, Biobase.Infernal
eneeVerboseHitBiobase.Infernal.VerboseHit.Import, Biobase.Infernal
fromFile 
1 (Function)Biobase.Infernal.CM.Import
2 (Function)Biobase.Infernal.Clan.Import
3 (Function)Biobase.Infernal.Taxonomy.Import
4 (Function)Biobase.Infernal.VerboseHit.Import
5 (Function)Biobase.Infernal.TabularHit.Import
gaBiobase.Infernal.CM
identifierBiobase.Infernal.Clan, Biobase.Infernal
iSpeciesMapBiobase.Infernal.Taxonomy.Import
iTaxIdMapBiobase.Infernal.Taxonomy.Import
localBeginBiobase.Infernal.CM
localEndBiobase.Infernal.CM
membersBiobase.Infernal.Clan, Biobase.Infernal
mkClanBiobase.Infernal.Clan.Import
mkSpeciesBiobase.Infernal.Taxonomy.Import
name 
1 (Function)Biobase.Infernal.CM
2 (Function)Biobase.Infernal.Taxonomy, Biobase.Infernal
ncBiobase.Infernal.CM
newAccBiobase.Infernal.VerboseHit.Export
nodesBiobase.Infernal.CM
pathsBiobase.Infernal.CM
shortenNameBiobase.Infernal.Taxonomy
showVerboseHitBiobase.Infernal.VerboseHit.Export
Species 
1 (Type/Class)Biobase.Infernal.Taxonomy, Biobase.Infernal
2 (Data Constructor)Biobase.Infernal.Taxonomy, Biobase.Infernal
StrandBiobase.Infernal.VerboseHit
stringsBiobase.Infernal.Clan, Biobase.Infernal
TabularHit 
1 (Type/Class)Biobase.Infernal.TabularHit, Biobase.Infernal
2 (Data Constructor)Biobase.Infernal.TabularHit, Biobase.Infernal
taxidBiobase.Infernal.Taxonomy, Biobase.Infernal
tcBiobase.Infernal.CM
tFromFileBiobase.Infernal
thBitScoreBiobase.Infernal.TabularHit, Biobase.Infernal
thEvalueBiobase.Infernal.TabularHit, Biobase.Infernal
thFromFileBiobase.Infernal
thGCpercentBiobase.Infernal.TabularHit, Biobase.Infernal
thModelBiobase.Infernal.TabularHit, Biobase.Infernal
thQueryStartBiobase.Infernal.TabularHit, Biobase.Infernal
thQueryStopBiobase.Infernal.TabularHit, Biobase.Infernal
thScaffoldStartBiobase.Infernal.TabularHit, Biobase.Infernal
thScaffoldStopBiobase.Infernal.TabularHit, Biobase.Infernal
thTargetBiobase.Infernal.TabularHit, Biobase.Infernal
transitionBiobase.Infernal.CM
VerboseHit 
1 (Type/Class)Biobase.Infernal.VerboseHit, Biobase.Infernal
2 (Data Constructor)Biobase.Infernal.VerboseHit, Biobase.Infernal
vhAnnotationBiobase.Infernal.VerboseHit, Biobase.Infernal
vhCMBiobase.Infernal.VerboseHit, Biobase.Infernal
vhConsensusBiobase.Infernal.VerboseHit, Biobase.Infernal
vhEneeByteStringBiobase.Infernal
vhEneeByteStringsBiobase.Infernal
vhEvalueBiobase.Infernal.VerboseHit, Biobase.Infernal
vhFromFileBiobase.Infernal
vhGCBiobase.Infernal.VerboseHit, Biobase.Infernal
vhPvalueBiobase.Infernal.VerboseHit, Biobase.Infernal
vhQueryBiobase.Infernal.VerboseHit, Biobase.Infernal
vhScaffoldBiobase.Infernal.VerboseHit, Biobase.Infernal
vhScoreBiobase.Infernal.VerboseHit, Biobase.Infernal
vhScoringBiobase.Infernal.VerboseHit, Biobase.Infernal
vhSequenceBiobase.Infernal.VerboseHit, Biobase.Infernal
vhStrandBiobase.Infernal.VerboseHit, Biobase.Infernal
vhTargetBiobase.Infernal.VerboseHit, Biobase.Infernal
vhWussBiobase.Infernal.VerboseHit, Biobase.Infernal