The BiobaseInfernal package

[Tags:gpl, library]

Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.

The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.

Changes in 0.5.4.1

Properties

Versions 0.0.2.0, 0.0.2.1, 0.5.0.0, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.3.1, 0.5.4.0, 0.5.4.1, 0.6.0.0, 0.6.0.1, 0.6.2.0, 0.7.0.0, 0.7.0.1, 0.7.1.0
Dependencies attoparsec, attoparsec-iteratee, base (>3 && <5), bytestring, containers, either-unwrap, iteratee, PrimitiveArray, transformers, tuple, vector [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2011
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Stability experimental
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Uploaded Wed Sep 21 14:40:50 UTC 2011 by ChristianHoener
Distributions NixOS:0.7.1.0
Downloads 4477 total (123 in the last 30 days)
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Status Docs uploaded by user
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