Biobase.Infernal.CM.Import

Iteratee-based parsing of Infernal covariance models.

TODO does not create working CMs yet. Only partial key/value parsing is implemented.

iteratee stuff

eneeCM :: Monad m => Enumeratee ByteString [CM] m a

iteratee-based parsing of human-readable CMs.

iterNodes :: Monad m => Iteratee [ByteString] m [Node]

data Node

Constructors

Node

Fields

nodeHeader :: ByteString

nodeIndex :: Int

isNodeHeader :: ByteString -> (Bool, (ByteString, Int))

isState :: ByteString -> (Bool, ByteString)

convenience functions

fromFile :: FilePath -> IO (ID2CM, AC2CM)

Read covariance models from file. This parser reads one or more CMs from file.

fromFileZip :: FilePath -> IO (ID2CM, AC2CM)

Read covariance models from a compressed file.