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Genbank: Libary for processing the NCBI genbank format

[ bioinformatics, library, program ] [ Propose Tags ]

Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format.

For more information on genbank refer to: http://www.ncbi.nlm.nih.gov/genbank/

For a sample genbank record see: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

###GenbankData - Datastructures for Genbank format

Contains Haskell datastructures for Genbank format and for contained features, subfeatures

###GenbankParser - Parse Genbank format

Contains Haskell functions to parse Genbank format from files or internal Strings.

###GenbankTools - Tools for processing Genbank

Contains Haskell functions to extract nucleotide sequences for features

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Versions [RSS] 1.0.0, 1.0.1, 1.0.2, 1.0.3
Dependencies base (>=4.5 && <5), biocore, biofasta, bytestring, parsec, split [details]
License LicenseRef-GPL
Author Florian Eggenhofer
Maintainer egg@tbi.univie.ac.at
Category Bioinformatics
Source repo head: git clone https://github.com/eggzilla/Genbank
this: git clone https://github.com/eggzilla/Genbank/tree/v1.0.0(tag v1.0.0)
Uploaded by FlorianEggenhofer at 2014-09-08T20:08:05Z
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Reverse Dependencies 1 direct, 0 indirect [details]
Downloads 4301 total (13 in the last 30 days)
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Readme for Genbank-1.0.0

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#Genbank Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format. For more information on genbank refer to: http://www.ncbi.nlm.nih.gov/genbank/ For a sample genbank record see: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html ###Datastructures for Genbank format (GenbankData.hs) Contains Haskell datastructures for Genbank format and for contained features, subfeatures ###Parse Genbank format (GenbankParser.hs) Contains Haskell functions to parse Genbank format from files or internal Strings. ###Tools for processing Genbank (GenbankTools) Contains Haskell functions to extract nucleotide sequences for features