The Genbank package

[ Tags: bioinformatics, gpl, library, program ] [ Propose Tags ]

Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format.

For more information on genbank refer to: http://www.ncbi.nlm.nih.gov/genbank/

For a sample genbank record see: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

Bio.GenbankData - Datastructures for Genbank format

Contains Haskell datastructures for Genbank format and for contained features, subfeatures

Bio.GenbankParser - Parse Genbank format

Contains Haskell functions to parse Genbank format from files or internal Strings.

Bio.GenbankTools - Tools for processing Genbank

Contains Haskell functions to extract nucleotide sequences for features


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Properties

Versions 1.0.0, 1.0.1, 1.0.2, 1.0.3
Dependencies base (>=4.5 && <5), biocore, biofasta, bytestring, cmdargs, Genbank, parsec, split [details]
License GPL
Author Florian Eggenhofer
Maintainer egg@tbi.univie.ac.at
Category Bioinformatics
Source repository head: git clone https://github.com/eggzilla/Genbank
this: git clone https://github.com/eggzilla/Genbank/tree/1.0.3(tag 1.0.3)
Uploaded Sun Oct 26 13:29:26 UTC 2014 by FlorianEggenhofer
Distributions LTSHaskell:1.0.3, NixOS:1.0.3, Stackage:1.0.3, Tumbleweed:1.0.3
Executables GenbankTest
Downloads 1193 total (50 in the last 30 days)
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Status Docs uploaded by user
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Readme for Genbank-1.0.3

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#Genbank Build Status

Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format. For more information on genbank refer to:

http://www.ncbi.nlm.nih.gov/genbank/

For a sample genbank record see:

http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

###Datastructures for Genbank format (GenbankData.hs) Contains Haskell datastructures for Genbank format and for contained features, subfeatures ###Parse Genbank format (GenbankParser.hs) Contains Haskell functions to parse Genbank format from files or internal Strings. ###Tools for processing Genbank (GenbankTools) Contains Haskell functions to extract nucleotide sequences for features