The RNAFoldProgs package

[Tags: gpl, program]

RNA secondary structure following Fast Folding and Comparison of RNA Secondary Structures, Hofacker et al., 1994. Uses the Turner 2004 parameter set. The algorithm work on an algebraic ring structure that is instanciated as required. This prelimenary release contains the minimum-free energy version only.


Properties

Versions0.0.0.1, 0.0.0.2, 0.0.0.3
Dependenciesbase (==4.*), Biobase (==0.0.2.*), BiobaseVienna (==0.0.2.*), cmdargs (==0.6), PrimitiveArray (==0.0.2.*), RNAFold (==0.0.2.*), split (>=0.0.2.1)
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen (Haskell), Ivo L. Hofacker et al. (ViennaRNA package)
AuthorChristian Hoener zu Siederdissen (Haskell), Ivo L. Hofacker et al. (ViennaRNA package)
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
ExecutableshsRNAEval, hsRNAFold
Upload dateWed Sep 22 22:29:34 UTC 2010
Uploaded byChristianHoener
Downloads239 total (22 in last 30 days)

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