The RNAFoldProgs package

[ Tags: bioinformatics, gpl, program ] [ Propose Tags ]

RNA secondary structure following "Fast Folding and Comparison of RNA Secondary Structures, Hofacker et al., 1994". Uses the Turner 2004 parameter set. The algorithm work on an algebraic ring structure that is instanciated as required. This prelimenary release contains the minimum-free energy version only.

Properties

Versions 0.0.0.1, 0.0.0.2, 0.0.0.3
Dependencies base (==4.*), Biobase (==0.0.2.*), BiobaseTurner (>=0.0.2.1 && <0.0.3), BiobaseTypes (>=0.0.2.1 && <0.0.3), BiobaseVienna (==0.0.2.*), cmdargs (==0.6), containers, HsTools (>=0.0.1.1), primitive (==0.3.*), PrimitiveArray (==0.0.2.*), RNAFold (==0.0.2.*), split (>=0.0.2.1), vector (==0.7.*) [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen (Haskell), Ivo L. Hofacker et al. (ViennaRNA package)
Author Christian Hoener zu Siederdissen (Haskell), Ivo L. Hofacker et al. (ViennaRNA package)
Maintainer choener@tbi.univie.ac.at
Category Bioinformatics
Uploaded Thu Sep 23 11:53:04 UTC 2010 by ChristianHoener
Distributions NixOS:0.0.0.3
Executables hsRNAEval, hsRNAFold
Downloads 909 total (17 in the last 30 days)
Rating 0.0 (0 ratings) [clear rating]
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Status Docs not available [build log]
All reported builds failed as of 2016-10-25 [all 10 reports]
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