The RNAFold package

[Tags: gpl, library, program]

RNAfold v2 using the ADPfusion library. The RNAfold algorithm is used to determine how fast we can be compared to a highly optimized C program.

Please use GHC 7.6 or newer.

NOTE I'd like to rename this package to RNAfold, like the C implementation. Do not install globally, especially if you normally use RNAfold from the ViennaRNA package, for obvious reasons.


Properties

Versions0.0.2.1, 1.99.1.0, 1.99.1.1, 1.99.1.2, 1.99.1.3, 1.99.3.4
DependenciesADPfusion (>=0.2.0.0), base (==4.*), BiobaseTurner (>=0.3.1.1), BiobaseVienna (>=0.3), BiobaseXNA (>=0.7), cmdargs (>=0.10), containers, deepseq (>=1.3), lens (>=3.8), primitive (>=0.5), PrimitiveArray (>=0.5), repa (>=3.2), RNAFold, strict (>=0.3.2), vector (>=0.10)
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2010-2013
AuthorChristian Hoener zu Siederdissen (Haskell), Ivo L. Hofacker et al (ViennaRNA), 2010-2013
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.tbi.univie.ac.at/~choener/adpfusion
Source repositoryhead: git clone git://github.com/choener/RNAfold
ExecutablesRNAEval, RNAFold
Upload dateFri Dec 6 23:47:37 UTC 2013
Uploaded byChristianHoener
Downloads409 total (57 in last 30 days)

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