| AAProp | Bio.Sequence.AminoProperties |
| Ala | Bio.Sequence.SeqData, Bio.Sequence |
| Align |
| 1 (Type/Class) | Bio.Alignment.Bowtie |
| 2 (Data Constructor) | Bio.Alignment.Bowtie |
| Alignment | Bio.Alignment.AlignData |
| aliphatic | Bio.Sequence.AminoProperties |
| Amino | Bio.Sequence.SeqData, Bio.Sequence |
| andSameSeq | Bio.Location.OnSeq |
| Ann | Bio.Sequence.GeneOntology, Bio.Sequence.GOA |
| Annotation | Bio.Sequence.GeneOntology, Bio.Sequence.GOA |
| appendHeader | Bio.Sequence.SeqData, Bio.Sequence |
| Arg | Bio.Sequence.SeqData, Bio.Sequence |
| aromatic | Bio.Sequence.AminoProperties |
| asksGFF | Bio.GFF3.FeatureHierSequences |
| Asm | Bio.Alignment.ACE |
| Asn | Bio.Sequence.SeqData, Bio.Sequence |
| Asp | Bio.Sequence.SeqData, Bio.Sequence |
| Assembly | Bio.Alignment.ACE |
| Asx | Bio.Sequence.SeqData, Bio.Sequence |
| attrByTag | Bio.GFF3.Feature |
| attributes | Bio.GFF3.Feature |
| attrTag | Bio.GFF3.Feature |
| attrValues | Bio.GFF3.Feature |
| Aux | Bio.Alignment.BlastData, Bio.Alignment.BlastFlat |
| aux |
| 1 (Function) | Bio.Alignment.BlastData |
| 2 (Function) | Bio.Alignment.BlastFlat |
| avg | Bio.Sequence.SFF_filters |
