| RCA | Bio.Sequence.GeneOntology, Bio.Sequence.GOA |
| rcontig | Bio.Sequence.HashWord, Bio.Sequence |
| rcpacked | Bio.Sequence.HashWord, Bio.Sequence |
| read2Bit | Bio.Sequence.TwoBit, Bio.Sequence |
| readACE | Bio.Alignment.ACE |
| readbase | Bio.Alignment.Bowtie |
| readBED | Bio.Alignment.BED |
| ReadBlock |
| 1 (Type/Class) | Bio.Sequence.SFF |
| 2 (Data Constructor) | Bio.Sequence.SFF |
| readFasta | Bio.Sequence.Fasta, Bio.Sequence |
| readFastaQual | Bio.Sequence.Fasta, Bio.Sequence |
| readFastQ | Bio.Sequence.FastQ, Bio.Sequence |
| readGO | Bio.Sequence.GOA |
| readGOA | Bio.Sequence.GeneOntology, Bio.Sequence.GOA |
| ReadHeader |
| 1 (Type/Class) | Bio.Sequence.SFF |
| 2 (Data Constructor) | Bio.Sequence.SFF |
| ReadName |
| 1 (Type/Class) | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
| 2 (Data Constructor) | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
| readnt | Bio.Alignment.Soap |
| readNuc | Bio.Sequence |
| readObo | Bio.Sequence.GeneOntology, Bio.Sequence.GOA |
| readPhd | Bio.Sequence.Phd, Bio.Sequence |
| readProt | Bio.Sequence |
| readPSL | Bio.Alignment.PSL |
| readQual | Bio.Sequence.Fasta, Bio.Sequence |
| reads | Bio.Alignment.ACE |
| readSFF | Bio.Sequence.SFF |
| readTerms | Bio.Sequence.GeneOntology, Bio.Sequence.GOA |
| readXML |
| 1 (Function) | Bio.Alignment.BlastXML |
| 2 (Function) | Bio.Alignment.BlastFlat |
| read_header | Bio.Sequence.SFF |
| read_name | Bio.Sequence.SFF |
| recoverSFF | Bio.Sequence.SFF |
| refbase | Bio.Alignment.Bowtie |
| refCLoc | Bio.Alignment.Bowtie |
| refCSeqLoc |
| 1 (Function) | Bio.Alignment.Bowtie |
| 2 (Function) | Bio.Alignment.Soap |
| refname |
| 1 (Function) | Bio.Alignment.Bowtie |
| 2 (Function) | Bio.Alignment.Soap |
| refnt | Bio.Alignment.Soap |
| refSeqLoc |
| 1 (Function) | Bio.Alignment.Bowtie |
| 2 (Function) | Bio.Alignment.Soap |
| refSeqPos |
| 1 (Function) | Bio.Alignment.Bowtie |
| 2 (Function) | Bio.Alignment.Soap |
| refstart | Bio.Alignment.Soap |
| region | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
| removePrefix | Bio.Sequence.KEGG |
| Repl | Bio.Alignment.AlignData |
| repmatch | Bio.Alignment.PSL |
| results | Bio.Alignment.BlastData, Bio.Alignment.BlastFlat |
| Rev |
| 1 (Data Constructor) | Bio.Alignment.AlignData |
| 2 (Data Constructor) | Bio.Alignment.BED |
| RevCompl | Bio.Location.Strand |
| revCompl | Bio.Location.Strand |
| revcompl | Bio.Sequence.SeqData, Bio.Sequence |
| revcompl' | Bio.Sequence.SeqData, Bio.Sequence |
| rRNAs | Bio.GFF3.SGD |
| runGFF | Bio.GFF3.FeatureHierSequences |
| runGFFIO | Bio.GFF3.FeatureHierSequences |
