bio-0.5.3: A bioinformatics library

Index - P

packFlowsBio.Sequence.SFF
pairendBio.Alignment.Soap
pam30Bio.Alignment.Matrices
pam70Bio.Alignment.Matrices
parentIdsBio.GFF3.Feature
parents 
1 (Function)Bio.GFF3.FeatureHier
2 (Function)Bio.GFF3.FeatureHierSequences
parentsMBio.GFF3.FeatureHier
parse 
1 (Function)Bio.Alignment.Blast
2 (Function)Bio.Sequence.FastQ
3 (Function)Bio.Alignment.Bowtie
4 (Function)Bio.Alignment.Soap
5 (Function)Bio.GFF3.Feature
6 (Function)Bio.GFF3.FeatureHierSequences
parseMismatchBio.Alignment.Soap
parsePSLBio.Alignment.PSL
parseWithFastaBio.GFF3.Feature
perSeqBio.Location.OnSeq
perSeqUpdateBio.Location.OnSeq
phaseBio.GFF3.Feature
PheBio.Sequence.SeqData, Bio.Sequence
PlusBio.Alignment.BlastData, Bio.Alignment.BlastFlat
polarBio.Sequence.AminoProperties
Pos 
1 (Type/Class)Bio.Location.Position
2 (Data Constructor)Bio.Location.Position
posInto 
1 (Function)Bio.Location.ContigLocation
2 (Function)Bio.Location.Location
positiveBio.Sequence.AminoProperties
posOutof 
1 (Function)Bio.Location.ContigLocation
2 (Function)Bio.Location.Location
ProBio.Sequence.SeqData, Bio.Sequence
ProcBio.Sequence.GeneOntology, Bio.Sequence.GOA
progressiveBio.Alignment.Multiple
PSL 
1 (Type/Class)Bio.Alignment.PSL
2 (Data Constructor)Bio.Alignment.PSL
pslHeaderBio.Alignment.PSL
ptestBio.Alignment.ACE
putSeqLnBio.Sequence.SeqData