bio-0.5.3: A bioinformatics library

Index - R

rapid_adapterBio.Sequence.SFF_filters
rbToSequenceBio.Sequence.SFF
RCABio.Sequence.GeneOntology, Bio.Sequence.GOA
rcontigBio.Sequence.HashWord, Bio.Sequence
rcpackedBio.Sequence.HashWord, Bio.Sequence
read2BitBio.Sequence.TwoBit, Bio.Sequence
readACEBio.Alignment.ACE
readbaseBio.Alignment.Bowtie
readBEDBio.Alignment.BED
ReadBlock 
1 (Type/Class)Bio.Sequence.SFF
2 (Data Constructor)Bio.Sequence.SFF
readFastaBio.Sequence.Fasta, Bio.Sequence
readFastaQualBio.Sequence.Fasta, Bio.Sequence
readFastQBio.Sequence.FastQ, Bio.Sequence
readGOBio.Sequence.GOA
readGOABio.Sequence.GeneOntology, Bio.Sequence.GOA
ReadHeader 
1 (Type/Class)Bio.Sequence.SFF
2 (Data Constructor)Bio.Sequence.SFF
readIlluminaBio.Sequence.FastQ, Bio.Sequence
ReadName 
1 (Type/Class)Bio.Sequence.SFF_name, Bio.Sequence.SFF
2 (Data Constructor)Bio.Sequence.SFF_name, Bio.Sequence.SFF
readntBio.Alignment.Soap
readNucBio.Sequence
readOboBio.Sequence.GeneOntology, Bio.Sequence.GOA
readPhdBio.Sequence.Phd, Bio.Sequence
readProtBio.Sequence
readPSLBio.Alignment.PSL
readQualBio.Sequence.Fasta, Bio.Sequence
readsBio.Alignment.ACE
readSangerQBio.Sequence.FastQ, Bio.Sequence
readSFFBio.Sequence.SFF
readTermsBio.Sequence.GeneOntology, Bio.Sequence.GOA
readXML 
1 (Function)Bio.Alignment.BlastXML
2 (Function)Bio.Alignment.BlastFlat
read_headerBio.Sequence.SFF
read_nameBio.Sequence.SFF
recoverSFFBio.Sequence.SFF
refbaseBio.Alignment.Bowtie
refCLocBio.Alignment.Bowtie
refCSeqLoc 
1 (Function)Bio.Alignment.Bowtie
2 (Function)Bio.Alignment.Soap
refname 
1 (Function)Bio.Alignment.Bowtie
2 (Function)Bio.Alignment.Soap
refntBio.Alignment.Soap
refSeqLoc 
1 (Function)Bio.Alignment.Bowtie
2 (Function)Bio.Alignment.Soap
refSeqPos 
1 (Function)Bio.Alignment.Bowtie
2 (Function)Bio.Alignment.Soap
refstartBio.Alignment.Soap
regionBio.Sequence.SFF_name, Bio.Sequence.SFF
removePrefixBio.Sequence.KEGG
ReplBio.Alignment.AlignData
repmatchBio.Alignment.PSL
resultsBio.Alignment.BlastData, Bio.Alignment.BlastFlat
Rev 
1 (Data Constructor)Bio.Alignment.AlignData
2 (Data Constructor)Bio.Alignment.BED
RevComplBio.Location.Strand
revComplBio.Location.Strand
revcomplBio.Sequence.SeqData, Bio.Sequence
revcompl'Bio.Sequence.SeqData, Bio.Sequence
rna_adapterBio.Sequence.SFF_filters
rna_adapter2Bio.Sequence.SFF_filters
rna_adapter3Bio.Sequence.SFF_filters
rRNAsBio.GFF3.SGD
runGFFBio.GFF3.FeatureHierSequences
runGFFIOBio.GFF3.FeatureHierSequences