heatitup: Find and annotate ITDs.
Find and annotate ITDs using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.
Modules
- Classify
- Diffusion
- Load
- Plot
- Repeated
- Spacer
- Types
- Utility
Downloads
- heatitup-0.5.4.0.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
- No Candidates
Versions [RSS] | 0.5.3.3, 0.5.4.0 |
---|---|
Dependencies | base (>=4.7 && <5), bytestring, bytestring-show, cassava, colour, containers, diagrams-core, diagrams-html5, diagrams-lib, diagrams-pgf, diagrams-rasterific, diagrams-svg, edit-distance, fasta, heatitup, lens, optparse-applicative, pipes, pipes-bytestring, pipes-csv, safe, string-similarity, stringsearch, suffixtree, vector [details] |
License | GPL-3.0-only |
Copyright | 2019 Gregory W. Schwartz |
Author | Gregory W. Schwartz |
Maintainer | gsch@pennmedicine.upenn.edu |
Category | Bioinformatics |
Home page | http://github.com/GregorySchwartz/heatitup#readme |
Source repo | head: git clone https://github.com/githubuser/heatitup |
Uploaded | by GregorySchwartz at 2019-06-13T19:06:17Z |
Distributions | |
Executables | heatitup |
Downloads | 1173 total (0 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
Your Rating | |
Status | Docs not available [build log] All reported builds failed as of 2019-06-13 [all 3 reports] |