heatitup: Find and annotate ITDs.

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Find and annotate ITDs using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.

Versions 0.5.3.3
Dependencies base (>=4.7 && <5), bytestring, bytestring-show, cassava, colour, containers, diagrams-core, diagrams-html5, diagrams-lib, diagrams-pgf, diagrams-rasterific, diagrams-svg, edit-distance, fasta, heatitup, lens, optparse-applicative, pipes, pipes-bytestring, pipes-csv, safe, string-similarity, stringsearch, suffixtree, vector [details]
License GPL-3.0-only
Copyright 2018 Gregory W. Schwartz
Author Gregory W. Schwartz
Maintainer gsch@pennmedicine.upenn.edu
Category Bioinformatics
Home page http://github.com/GregorySchwartz/heatitup#readme
Source repo head: git clone https://github.com/githubuser/heatitup
Uploaded by GregorySchwartz at Tue Aug 28 19:17:08 UTC 2018
Distributions NixOS:0.5.3.3
Executables heatitup
Downloads 56 total (14 in the last 30 days)
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Status Docs not available [build log]
All reported builds failed as of 2018-08-28 [all 3 reports]
Hackage Matrix CI

Modules

  • Classify
  • Diffusion
  • Load
  • Plot
  • Print
  • Repeated
  • Spacer
  • Types
  • Utility

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