modify-fasta-0.8.0.3: Modify fasta (and CLIP) files in several optional ways

Safe HaskellNone
LanguageHaskell98

FilterCloneMap

Documentation

isRight' :: Either a b -> Bool Source

listToMaybe' :: [a] -> Maybe [a] Source

filterHighlyMutated :: GeneticUnit -> CloneMap -> (CloneMap, Maybe String) Source

removeCodonMutCount :: CodonMut -> Text -> Text -> CloneMap -> CloneMap Source

removeStopsCloneMap :: GeneticUnit -> Int -> CloneMap -> (CloneMap, Maybe String) Source

removeDuplicatesCloneMap :: CloneMap -> CloneMap Source

removeOutOfFrameSeqs :: CloneMap -> CloneMap Source

removeCustomFilter :: Bool -> Bool -> Maybe Int -> Text -> CloneMap -> CloneMap Source

removeAllCustomFilters :: Bool -> Bool -> CloneMap -> [(Maybe Int, Text)] -> CloneMap Source

removeEmptyClone :: CloneMap -> CloneMap Source

convertToAminoAcidsCloneMap :: CloneMap -> (CloneMap, Maybe String) Source