Index
| addFillerGermlines | Utility |
| addLengthHeader | Utility |
| AminoAcid | Types |
| changeAllFields | TransformFastaList |
| changeField | TransformFastaList |
| choose | Diversity |
| CloneEntry | Types |
| Codon | Types |
| CodonMut | Types |
| CodonMutations | Types |
| convertToAminoAcidsCloneMap | FilterCloneMap |
| convertToAminoAcidsFastaSequence | TransformFastaList |
| CountMap | Types |
| diversity | Diversity |
| Field | Types |
| fillInSequence | TransformFastaList |
| FillInValue | Types |
| filterHighlyMutated | FilterCloneMap |
| filterHighlyMutatedEntry | FilterCloneList |
| Frame | Types |
| FrameType | Types |
| frequentMutations | TransformCloneList |
| GeneticUnit | Types |
| getField | Utility |
| getRegionSequence | TransformFastaList |
| hamming | Diversity |
| hasAllCustomFilters | FilterFastaList |
| hasCustomFilter | FilterFastaList |
| hasNoStops | FilterFastaList |
| ID | Types |
| InFrame | Types |
| isInFrame | FilterFastaList |
| isRight' | FilterCloneMap |
| listToMaybe' | FilterCloneMap |
| Mutation | Types |
| Nucleotide | Types |
| onlyMutations | TransformCloneList |
| OutFrame | Types |
| Position | Types |
| printCloneEntry | |
| printFasta | |
| printFastaNoGermline | |
| printSequenceCount | |
| rarefactionCurve | Diversity |
| rarefactionViable | Diversity |
| removeAllCustomFilters | FilterCloneMap |
| removeCodonMutCount | FilterCloneMap |
| removeCustomFilter | FilterCloneMap |
| removeDuplicatesCloneMap | FilterCloneMap |
| removeEmptyClone | FilterCloneMap |
| removeOutOfFrameSeqs | FilterCloneMap |
| removeStopsCloneMap | FilterCloneMap |
| removeUnknownNucs | TransformFastaList |
| replaceChars | Utility, TransformFastaList |
| Start | Types |
| Stop | Types |
| trimFasta | TransformFastaList |