too-many-cells: Cluster single cells and analyze cell clade relationships.

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Different methods to cluster and analyze single cell data with diversity indices and differential expression.

Versions [faq] 0.1.0.0
Dependencies aeson, base (>=4.7 && <5), birch-beer, bytestring, cassava, colour, containers, deepseq, diagrams, diagrams-cairo, diagrams-graphviz, diagrams-lib, differential, directory, diversity, fgl, filepath, find-clumpiness, foldl, graphviz, hierarchical-clustering, hierarchical-spectral-clustering, hmatrix, inline-r, lens, managed, matrix-market-attoparsec, mltool, modularity, mtl, optparse-generic, palette, parallel, plots, safe, scientific, sparse-linear-algebra, spectral-clustering, split, statistics, streaming, streaming-bytestring, streaming-cassava, streaming-utils, streaming-with, SVGFonts, terminal-progress-bar, text, text-show, too-many-cells, transformers, vector, vector-algorithms [details]
License GPL-3.0-only
Copyright 2018 Gregory W. Schwartz
Author Gregory W. Schwartz
Maintainer gsch@pennmedicine.upenn.edu
Category Bioinformatics
Home page http://github.com/GregorySchwartz/too-many-cells#readme
Source repo head: git clone https://github.com/GregorySchwartz/too-many-cells
Uploaded by GregorySchwartz at Thu Jan 10 18:11:33 UTC 2019
Distributions NixOS:0.1.0.0
Executables too-many-cells
Downloads 31 total (31 in the last 30 days)
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Status Hackage Matrix CI
Docs not available [build log]
All reported builds failed as of 2019-01-10 [all 3 reports]

Modules

  • TooManyCells
    • Differential
      • TooManyCells.Differential.Differential
      • TooManyCells.Differential.Types
    • Diversity
      • TooManyCells.Diversity.Diversity
      • TooManyCells.Diversity.Load
      • TooManyCells.Diversity.Plot
      • TooManyCells.Diversity.Types
    • File
      • TooManyCells.File.Types
    • MakeTree
      • TooManyCells.MakeTree.Adjacency
      • TooManyCells.MakeTree.Clumpiness
      • TooManyCells.MakeTree.Cluster
      • TooManyCells.MakeTree.Load
      • TooManyCells.MakeTree.Plot
      • TooManyCells.MakeTree.Print
      • TooManyCells.MakeTree.Types
    • Matrix
      • TooManyCells.Matrix.Load
      • TooManyCells.Matrix.Preprocess
      • TooManyCells.Matrix.Types
      • TooManyCells.Matrix.Utility
    • Paths
      • TooManyCells.Paths.Distance
      • TooManyCells.Paths.Plot
      • TooManyCells.Paths.Types

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